Detail information of GWHGAAEX002358/evm.TU.scaffold_12.114


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17561.00E-68Histone 2A
nrgi|743869048|ref|XP_010905725.1|1.03E-71PREDICTED: histone H2A [Elaeis guineensis]
Swissprottr|P25469|H2A1_SOLLC1.00E-74Histone H2A.1
trEMBLtr|A0A0A0KXF2|A0A0A0KXF2_CUCSA4.00E-73Uncharacterized protein {ECO:0000313|EMBL:KGN54228.1}
TAIRAT5G025601.00E-68histone H2A 12

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000952767165277705+
Transcript Sequence

Network for GWHGAAEX002358

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone19961.80E-14
PF16211.4Histone_H2A_C1001313.80E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0003677Molecular FunctionDNA binding
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms48.920
SRR2545915Juvenile tuber55.400
SRP108465SRR5643513five period of Gastrodia elata232.870
SRR5643514five period of Gastrodia elata273.090
SRR5643515five period of Gastrodia elata236.600
SRR5643524five period of Gastrodia elata297.870
SRR5643525five period of Gastrodia elata164.420
SRR5643528five period of Gastrodia elata116.160
SRR5643658five period of Gastrodia elata102.550
SRR5643659five period of Gastrodia elata102.000
SRR5643660five period of Gastrodia elata91.850
SRR5643661five period of Gastrodia elata114.560
SRR5643662five period of Gastrodia elata77.430
SRR5643663five period of Gastrodia elata75.250
SRR5643664five period of Gastrodia elata47.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1136.970
SRR6049655Rhizomagastrodiae_C368-T10_good_1203.110
SRR6049656Rhizomagastrodiae_C368-T07_good_1214.230
SRR6049657Rhizomagastrodiae_C368-T07_good_1135.140
SRR6049658Rhizomagastrodiae_C368-T04_good_1106.930
SRR6049659Rhizomagastrodiae_C368-T04_good_193.270
SRR6049660Rhizomagastrodiae_C368-T01_good_1161.550
SRR6049661Rhizomagastrodiae_C368-T04_good_1166.730
SRR6049662Rhizomagastrodiae_C368-T01_good_1273.450
SRR6049663Rhizomagastrodiae_C368-T01_good_1192.560
SRR6049664Rhizomagastrodiae_C368-T10_good_1284.980
SRR6049665Rhizomagastrodiae_C368-T10_good_1284.980
SRP279888GastroGastrodia elata tuber 68.29
JuvenJuvenile tuber147.78
Mother_GastroMother tuber of Gastrodia elata 146.74
Mother_JuvenMother tuber of Juvenile 111.52