Detail information of GWHGAAEX002359/evm.TU.scaffold_12.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 5.00E-29 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0078 | 1.00E-135 | GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins |
| nr | gi|672175368|ref|XP_008807735.1| | 1.31E-149 | PREDICTED: ras-related protein RABE1c-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|O24466|RAE1A_ARATH | 3.00E-136 | Ras-related protein RABE1a |
| trEMBL | tr|M0TX31|M0TX31_MUSAM | 2.00E-148 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P03220_001} |
| TAIR | AT3G53610 | 1.00E-135 | RAB GTPase homolog 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 5322012 | 5345613 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002359
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 17 | 178 | 2.00E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07901 | RAB8A, MEL | AMPK signaling pathway | map04152 |
| Endocytosis | map04144 | ||
| Autophagy - animal | map04140 | ||
| Tight junction | map04530 | ||
| Pancreatic secretion | map04972 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 79.300 |
| SRR2545915 | Juvenile tuber | 82.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 129.710 |
| SRR5643514 | five period of Gastrodia elata | 132.930 | |
| SRR5643515 | five period of Gastrodia elata | 145.280 | |
| SRR5643524 | five period of Gastrodia elata | 145.430 | |
| SRR5643525 | five period of Gastrodia elata | 172.710 | |
| SRR5643528 | five period of Gastrodia elata | 218.710 | |
| SRR5643658 | five period of Gastrodia elata | 160.900 | |
| SRR5643659 | five period of Gastrodia elata | 106.620 | |
| SRR5643660 | five period of Gastrodia elata | 96.950 | |
| SRR5643661 | five period of Gastrodia elata | 114.060 | |
| SRR5643662 | five period of Gastrodia elata | 103.850 | |
| SRR5643663 | five period of Gastrodia elata | 106.310 | |
| SRR5643664 | five period of Gastrodia elata | 89.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 92.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 138.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 108.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 81.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 111.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 90.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 88.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 92.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 141.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 122.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 151.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 151.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 137.13 |
| Juven | Juvenile tuber | 145.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 244.59 | |
| Mother_Juven | Mother tuber of Juvenile | 226.69 |