Detail information of GWHGAAEX002375/evm.TU.scaffold_12.138
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2116 | 2.00E-150 | Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism |
| nr | gi|695042683|ref|XP_009409005.1| | 0 | PREDICTED: phosphatidate phosphatase PAH1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SF47|PAH1_ARATH | 5.00E-151 | Phosphatidate phosphatase PAH1 |
| trEMBL | tr|M0TGC7|M0TGC7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P10390_001} |
| TAIR | AT3G09560 | 2.00E-150 | Lipin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 6293618 | 6298178 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002375
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04571.13 | Lipin_N | 1 | 100 | 1.50E-29 |
| PF16876.4 | Lipin_mid | 473 | 582 | 6.20E-12 |
| PF08235.12 | LNS2 | 637 | 696 | 9.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15728 | LPIN | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Glycerolipid metabolism | map00561 | ||
| Glycerophospholipid metabolism | map00564 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.010 |
| SRR2545915 | Juvenile tuber | 37.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.060 |
| SRR5643514 | five period of Gastrodia elata | 37.060 | |
| SRR5643515 | five period of Gastrodia elata | 29.420 | |
| SRR5643524 | five period of Gastrodia elata | 34.970 | |
| SRR5643525 | five period of Gastrodia elata | 34.920 | |
| SRR5643528 | five period of Gastrodia elata | 30.670 | |
| SRR5643658 | five period of Gastrodia elata | 32.300 | |
| SRR5643659 | five period of Gastrodia elata | 24.500 | |
| SRR5643660 | five period of Gastrodia elata | 24.400 | |
| SRR5643661 | five period of Gastrodia elata | 26.920 | |
| SRR5643662 | five period of Gastrodia elata | 24.890 | |
| SRR5643663 | five period of Gastrodia elata | 26.190 | |
| SRR5643664 | five period of Gastrodia elata | 22.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 54.62 |
| Juven | Juvenile tuber | 71.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.63 | |
| Mother_Juven | Mother tuber of Juvenile | 75.19 |