Gene detail

Detail information of GWHGAAEX002379/evm.TU.scaffold_12.145

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743781052\|ref\|XP_010920736.1\|	8.11E-127	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105044504 [Elaeis guineensis]
trEMBL	tr\|M0SWE7\|M0SWE7_MUSAM	3.00E-74	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P07180_001}
TAIR	AT3G53540	4.00E-22	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	6518714	6569264	-

Transcript Sequence
>GWHTAAEX002379 CACGTGTCAGAATCTCGATGGAACCAGAAATGGGAAGTAACGTGCGACCTCCTTGCGGCGGCTCACGTGCGATGCCTAGTTAATAAGTCCCGCGCTAACCTTCCGATATCTCACGCGAAGGAGCCAAATTTTCTGTCGGGTTTGATGGTCTCAATTGAAAGTTGGAACCCCGTCATTTACCCCGCGACTGTTCTCTCTTCCTCGATCTAATTAATCTTCGTTCTCAGTGTTTCTCATCACCATCCCTCAATCCCTGTTTCTTCTCAATCTTATTTATCCTCTGCTGGAGATTGGTATTGCCGTGATCTTTGTAGAGTGATGGAGCAGCCTTTTCCGCGAAGCGTGCGAACGAAGAGCGGAGAGAGGGGATCTTACCAAGCTGGCGCTAGAATTGGAGCCCAGGCTGTCTCAGCGGCTTCAAATTTCTCGACAGAGGCATATTATCGTCTCAGAGAACCAACAAGATCTCGAAAGATGAATCTATGCTCAACTTCTAGTGATGATTCTACCACAGAAGAAGATTCTTTTTCCTGCGAGTTACATGGAAGATTATGCAGGAAAGCTAATGGAACAACTGTTAATAAGTTAATTGATGAAGTAGTGCCAAGAGTTGCTGAAAAAAGGCGCTCATCTAGTGTGATTGCAAGACTGATGGGTCTTGATGAGCTTCCCTCTCCTCAGATAGCTTCTGACTTAAAAAATGAATCTGAAAATTTATTTGTCAAGAAATCATTTTCTGGACTTCTAGAGAAAAATGAACTTCCTGGGAATCATTCCCCTAATGTCAGCAGAAGGAAGAACCAAAATTTGAAGACTTTCAACGACTTTTTTGATTCATCAAAAGATAAGAAACATATTAGCCGCGTTGCTCAGAAGGAAAAGCGGCACCCTATGGCTTTTATTAAGCAACAATTCATTGAAGCAAACCGTCTAGCCCCATATGAGTCACATAAAAAATCCAAAGAGTTCCATGATGCGCTAGAAGTATTGGATTCGAACAGGGATATTTTTCTGAAATTTCTTCAAAAACCTAATTCTTTACTTGCAAAACATTTCCATGATTTTAAGCGTTCAAAATCCTCTTCTCATAATAGGCACTATGATATTTTAGAATCTTCAGCTTGTAATACTCAAGAAAAGAGCAGAACTTTTTATAGATCTGTGGAAATAAATAAGCCACAAACACGAACAAAGAAAGGAATTGCACAATCTCATACAAGACCGAACTCCAGCCTCCATTGCCACTCTACATACGACCATGTGGGTTCTCTTTTTCCCAAGTTTCTAAGGTCACAGTACACTAGCAAAAATGAGACTTCTCTACTTTCAACTACAGACTCTATTGTGGTCTTGGAGTCAAGTGCTCAAAATTCACTGAGTACTGGAAGAACAAAGTTATTTCCAATGTACCTACAAAATTATAAATTCAGTTGTTCGGAACACAGGCAATTTCGTCGAGAGCTCTTTGATGAAAGAAGTAAGCAGCATGGATTGCATGATGTCAAAACTAAAGAAGGCAGAACAAAGGCTGCCAATTACATATCTAGTGATGCTACAGAGCAAATAAAACAATCGTTAAGAAGTTATCCAGAAGAGGCTTTTAAAATAAATATTTATGACTCTTCGACTTGTTTAAGCAAACCATCTCTAAGTAGGGAGGTCATGAAGAGCCTTACTGAGCAATGGAAAAAAAGGCCTTATCGACAGAGGCTAGTGGGTGAAGGCATCCGCACTTTAGGTGAGTTGCTTTCCCTTCTTGATAAAGAAAGACCAAAAACTATGGGCCAGCATATTCTTAAAAATAAATCAGATAAACATTCTAATAAAGAAGATATTTATTGTTCATGGGCTTATCCTTCGAGTATTAGCAGCAGTGATGGATGGCAATCTGAAGCAGATGCATTTCTCCAGAGATTTGTAGATCACAAAAAAGTTTCATCTATTAACGGGTCATCAAAATCTGAAAACAAATGCCAACCTGGCTGCATCAACTTTCTTGAGGATTGCTACATGCTTAAAGATGTGCTTAATCTAAAGAAGGATGATTTGCAAAATTCAACCATAGAAAGTGAACATTCTCTGCCAAGAAAATCCATGTATCATAATAACAAGCCACAACTTTGTAGATCAGGAGGTGAAGAAAGTAACATACCTGTAAGGGAGGTTGAAGTGTGCCAAAATGAGCCTAAGAATATGATTAATCTTAATAAACTTGTTGAGCCAAAGCCAATCCATCTGCAGAGAAAAATGGATGATTTGATGTATCTGGTTTGCAATTCTACCGATTTGCAGAATTTGAATTCAAATAGATCTTTCTTGACTAACTTGCAAGAGTTTCGGCAATCAGCGAAACTTAATGACTTTTCTATCGTTGCATTTCAGAGTGGAGTTCATGAGAAAGCGGCTGAACGGTTAAGTCCAGTTTCAGTTCTAGAGCCTCATTCTGAAGATGAAAAATCAACTCCAGAATACCTGAAGCGAATCGGTGCAGGACTTCAGGATCTTCAAAGACAACTTAACCTTCTGGAATTGGAAACTGTTAATTCCGGTGATGAGCAACCCAATCCTTTTTCTCTTAATGACGAGACTTCAAAGAATGGAGGTGAAAGGGATTACCTATACTTGCTCGACGTACTAACTGCCTCCGGTATTTATCTGTCCAGTAAAAGCAAATTTTTTGACGCATGCTACTCGCCGGACAATCCGGTTTTCCCGGATGTGTTTGATAAGCTAGAACCCAAACACAATGCTGCATCTGCTACTAATTCATGGCCAAGATCAGAGAGGAAGCTGCTGTTTGATCATATAAACTTGGTTCTTTCTGAGGTGCTTGCCACGTCCATGGATTTGCACCCTTGGGTGGTAAAGTCAAGGAGGAGCATTTCTCATGGTTACGGCAAAGTGGTTGATGAGTCTTGGCGTCTGCTAAATCGGCAACGGGGCGAACTCGTCCGGGGAAAGCCGGAGGAGAAGGTTCTGGATGCCCAGTGGCTGTATCTTGATGACCATATCGACATGGTTGGAAGAGAGATTGAGAAAATGCTCAAGGATGATCTCTTGGACGAACTTGTTTCTGAGTTTTTGACCGGATAATGGATTGTTTGTTGTCCTATCCATTCGGCTTCAAGGAGCCGTCATTGAATGTGCTAGAGAAGACTAACAATGCCGCCAATCTCTCGAGTTTGCTATGAAGTTTACTCACTGGTTGTGAGTACAATATGTGATAAAGTGCTTGTGCATATATTCATTATATTCTGAAGCTTACTGTCATAATGTTTAACATTGGCTTTAGAGAACAGAGATAATAATCTTGAGATTGACATCATTGAAGAAGGCCGCAGCTATGAATCCTAGAGGACTGATCACTTCATCGGCCTTCAAGAAGGGCATATGGGGCTGGCTCCCTTTTTGTTTGTCACCTGAAAACCAAAGTGGAATTCCGCACCAGTATTGAATTGCGTCTGCTGCAGTGTTAAGTTCAAAGTCTCTCAGTCTTTTCTGAACCAACACATCACTGATTATAGCTTTTGATTGTATTTTCTTGGCTCTTGGTAGTAAAGATTAAGGGGTTGGAAAATGTATATTAATTTGTAGAAACACAATAGTTTATTTTTTTCTCCCTTCTCAGCATTTGTTTATAACGTTGCTTTGTGTGTGTTATAGATGTGATGACTAATTTGTGTCACAAAGTTTTGAAAAAAAAGACTGTCTATCGCCATTTGTTTGTATTTATAATGTTTGCCATCACAAAATTTGTGAAACACAATTGTTATGTTTTGATGCTTTTGTACAGTCTCAATAAAAAATATTGGAAT

Network for GWHGAAEX002379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14383.5	VARLMGL	101	121	3.50E-06
PF12552.7	DUF3741	197	240	1.40E-17
PF14309.5	DUF4378	765	916	2.50E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.800
SRP064423	SRR2545915	Juvenile tuber	14.580
SRP108465	SRR5643513	five period of Gastrodia elata	4.130
	SRR5643514	five period of Gastrodia elata	5.530
	SRR5643515	five period of Gastrodia elata	6.130
	SRR5643524	five period of Gastrodia elata	5.860
	SRR5643525	five period of Gastrodia elata	9.780
	SRR5643528	five period of Gastrodia elata	9.050
	SRR5643658	five period of Gastrodia elata	7.870
	SRR5643659	five period of Gastrodia elata	5.980
	SRR5643660	five period of Gastrodia elata	8.970
	SRR5643661	five period of Gastrodia elata	7.140
	SRR5643662	five period of Gastrodia elata	7.550
	SRR5643663	five period of Gastrodia elata	7.150
	SRR5643664	five period of Gastrodia elata	5.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.730
SRP279888	Gastro	Gastrodia elata tuber	6.34
	Juven	Juvenile tuber	4.33
	Mother_Gastro	Mother tuber of Gastrodia elata	10.30
	Mother_Juven	Mother tuber of Juvenile	8.03