Detail information of GWHGAAEX002381/evm.TU.scaffold_12.149
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159041684|ref|YP_001540936.1| | 1.00E-15 | DNA repair and recombination protein RadA [Caldivirga maquilingensis IC-167] |
| KOG | KOG1433 | 7.00E-29 | DNA repair protein RAD51/RHP55 |
| nr | gi|743787460|ref|XP_010922424.1| | 5.85E-109 | PREDICTED: DNA repair protein RAD51 homolog 4 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9LQQ2|RA51D_ARATH | 5.00E-83 | DNA repair protein RAD51 homolog 4 |
| trEMBL | tr|M0STG5|M0STG5_MUSAM | 6.00E-103 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30530_001} |
| TAIR | AT1G07745 | 7.00E-29 | homolog of RAD51 D |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 6707438 | 6746451 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002381
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08423.10 | Rad51 | 30 | 219 | 6.20E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10871 | RAD51L3, RAD51D | Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0008094 | Molecular Function | DNA-dependent ATPase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.930 |
| SRR2545915 | Juvenile tuber | 17.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.000 |
| SRR5643514 | five period of Gastrodia elata | 15.040 | |
| SRR5643515 | five period of Gastrodia elata | 15.430 | |
| SRR5643524 | five period of Gastrodia elata | 16.280 | |
| SRR5643525 | five period of Gastrodia elata | 23.530 | |
| SRR5643528 | five period of Gastrodia elata | 24.120 | |
| SRR5643658 | five period of Gastrodia elata | 30.790 | |
| SRR5643659 | five period of Gastrodia elata | 13.650 | |
| SRR5643660 | five period of Gastrodia elata | 13.020 | |
| SRR5643661 | five period of Gastrodia elata | 10.720 | |
| SRR5643662 | five period of Gastrodia elata | 9.980 | |
| SRR5643663 | five period of Gastrodia elata | 13.450 | |
| SRR5643664 | five period of Gastrodia elata | 11.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.32 |
| Juven | Juvenile tuber | 12.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.36 | |
| Mother_Juven | Mother tuber of Juvenile | 10.12 |