Detail information of GWHGAAEX002384/evm.TU.scaffold_12.153
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|51892473|ref|YP_075164.1| | 0 | cation-transporting ATPase [Symbiobacterium thermophilum IAM 14863] |
| KOG | KOG0202 | 0 | Ca2+ transporting ATPase |
| nr | gi|743781082|ref|XP_010920750.1| | 0 | PREDICTED: calcium-transporting ATPase 4, endoplasmic reticulum-type-like [Elaeis guineensis] |
| Swissprot | tr|Q9XES1|ECA4_ARATH | 0 | Calcium-transporting ATPase 4, endoplasmic reticulum-type |
| trEMBL | tr|C5WP97|C5WP97_SORBI | 0 | Putative uncharacterized protein Sb01g038990 {ECO:0000313|EMBL:EER92445.1} |
| TAIR | AT1G07670 | 0 | endomembrane-type CA-ATPase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 6978014 | 6983914 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002384
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00690.25 | Cation_ATPase_N | 28 | 95 | 1.30E-17 |
| PF00122.19 | E1-E2_ATPase | 148 | 363 | 2.30E-48 |
| PF00702.25 | Hydrolase | 380 | 745 | 6.60E-21 |
| PF00689.20 | Cation_ATPase_C | 816 | 1042 | 1.10E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 136.890 |
| SRR2545915 | Juvenile tuber | 128.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 143.710 |
| SRR5643514 | five period of Gastrodia elata | 130.360 | |
| SRR5643515 | five period of Gastrodia elata | 118.780 | |
| SRR5643524 | five period of Gastrodia elata | 137.490 | |
| SRR5643525 | five period of Gastrodia elata | 178.750 | |
| SRR5643528 | five period of Gastrodia elata | 129.270 | |
| SRR5643658 | five period of Gastrodia elata | 162.330 | |
| SRR5643659 | five period of Gastrodia elata | 152.760 | |
| SRR5643660 | five period of Gastrodia elata | 189.800 | |
| SRR5643661 | five period of Gastrodia elata | 155.100 | |
| SRR5643662 | five period of Gastrodia elata | 140.670 | |
| SRR5643663 | five period of Gastrodia elata | 144.610 | |
| SRR5643664 | five period of Gastrodia elata | 158.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 167.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 121.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 165.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 207.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 250.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 272.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 215.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 209.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 145.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 192.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 138.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 138.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 92.78 |
| Juven | Juvenile tuber | 147.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 124.99 | |
| Mother_Juven | Mother tuber of Juvenile | 160.68 |