Gene detail

Detail information of GWHGAAEX002386/evm.TU.scaffold_12.155

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1861	Leucine permease transcriptional regulator
nr	gi\|719991906\|ref\|XP_010253399.1\|	PREDICTED: leukocyte receptor cluster member 8 homolog isoform X2 [Nelumbo nucifera]
trEMBL	tr\|M0U5H5\|M0U5H5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP01630_001}
TAIR	AT2G39340	SAC3/GANP/Nin1/mts3/eIF-3 p25 family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	7073854	7135682	-

Transcript Sequence
>GWHTAAEX002386 CTCTCTCTCTCTCTCTCTCTCCGTGTGCGTGTGTGCTCTCGAACGATTTCAGAATTTCTTCTTCTTCTTGAATTTCTAGTATTTAATGAACCTATTGTCGTTTATTTAGTTTAGGTTATGATTCGCTTGCTTAGTTTTTTGTTCTGGCGAGTCATTCTCTTAAATCTTCCGTCCTCTATGTGCTGCGGCGAAACTTTAGGGTTATGTCACTCTGTTCGTCACTTTAGATAATCTTTTGCACTTGTATTGTTTCTTGAAAGAGTTTGAATGTTGTCAACGGTGAATCAAGGAAGTCAGCCCGTTGCTGCAGTCGATCCCAGTTTCATGGAGAGACACTCTGGAGATGAAGTAAGTCAAGGGAATGCACCTGCATTTGCAGGTCCTTACTCTTGGCCTGCATCAGTTGCACAGGTATCAGTCTCATGGAATTATGGGGCAAATAATGGTTCTCTTGAAAATGCAGCGACGTCTAGTTCGGTTCACAATTATGATCCACTGAGGGATTCAACTGGTTCTGAAGGTGTTCATGCTGTTATGAACTCTGTACCTGAGACGACTGCTTCATCTAATGTGACTGCAACAAATGGAAGTCAAGCTTATACTGGTTATGCACCATATTCAAATTCTACCTATGCTTATGGGTATGACAACGTGCAGTATCAAAATAATTATTATGGCCACCCCTCACATCAGGCATGCTATACCTCCTACCAACAAATGGGTGCAAGTCAGAATTCAGGTTCTTTATATCAGCCTCATAGCTCATTTCAGAATACAGGCTCTTTTGCAACTCCCACAAGTTATTCTGGCGCTTATTTTGCTAGTGATCATCAGACAACAGCTGGATACCCATCAAATGGCTATTTTGACCAGAACAACTATTGGAATGATGGAAATGCTGGTACTTACTCTCTTCAATATGCAAATTATCCAACTTCAGATACAAATTCAACTACTTCAGCAAACAACACAGCAGCAAGTACATATCCTTATCAGCAGGACTGTAATCAGTGGTCATCAAATTATGGAACACCTGTACCAAATGTTAATTACCCTCCCGGATCAGGAAGCACATTTGCTGGTACTGTTCCAACAGTATCATATCCTGTTCAAAGCGCAAGTAGTGGATCATTGTATGTAAGCAACCAACCACCGCCTCCAGGCACTACATCTTGGAGGGGTGATTTGAGTCCCTCCACTTTACCTTCACAGGCACGGAATGGGCCTCCAGCTCTTTGTTCTAATGGTACTTGGGAAGAGAAGGCTTTTACAGTACAAAATTACCATCATAATCAGATACCTTCAAATTTGCCTATGCCTTCAGACTCAAAGCTTCCTTTGTATGAAAATCATGATGGAAATGAAAAAACTGCTTGTTCTCATGATTCAAGTTCTAGTTTGCAGGTTTTATCTACTGGTCAAATTTCTCAAAACCTTGAACAGCCTTTGCAATTCATATCAGCAATGGATGCTTGTCGGGTAAGCAAAATGCAGATTCCAACCAATCCTAGGATTGCTTCAAGCTTGGCTGTGGGCATGCCAAAACTTGACAAGGAAACTTCAACAAATATTGCTGCAGCAAAGCCAGCCTACATCAGCATCCAAGAACCAAAACTTAACAATCAGTCGCCGTCCAGTAGTAATACTGACACAATTTTTAAGGGAGCCTTCCCCCTTTCTCTTCGTGCATATGTGGAGAGGTGTTTTTCTCGGTGCAAGGATGATGCACAAAGGGCTGTCAATAAACTTATACTGTCAGAGATCATTGCAAAGGCAAAGGATGATGGTACATTGTGGACAAAGAATTGGGATCTGGAACTACTTTTCCCTTTACCAACTTCCAATTCAAATAAAGCTATTCAAAACATTTTACAAACTACAGTCCCATCTGTGAGTAAATTTCCAAGCAGACGCAGTAAAAGCCGGTGGGAGCCTGTTGCGGAGGAAAAACTAGATCTAAAAGTTGCACCAGTCAATCATGATTCAACAAAAAATGTTACCTGGGCTGAAAATACGCAACACAAATGTCGATTATCACTGGCTGGTGTTCGAATGCTTGATAATATGAATAATGGAAGGATAAGCATGAAGTTTTCATTGCCTGAACAACCTCCTATCAGTAAAACCTCTCAGAGGCCATTGAAGAAGTCACGCTTTTCTGATACAAACATTTCTGAGAATGGCAATTCTACAAGTGATAGCGATAAGGAACAAGAGTTGATTAAATATTATTCTAGTGCAATCACGCTAGAAAATTCACCTGAAGAAAGGAAAAGACGTGAGCATCGATCTAAGCGGTTTGAGAAGGGGCAGGAAAAGCAGGCAGATATAAAGCAACTCAAGACAAAAGGTGCAGGGGTTGGAAGTGTTTATTTAAGAAAAGCCAGCGCCATACTGCTTGCTAAAGGTTCTGATGATCAATGTCGAGCAGTTGAAGATATCTTTTGGGACACACTTACGGTTAAAGGAACCTGCCAGGATGTAGAAAAGCGTTATCTGCGTCTTACTTCTGCGCCTGATCCTGCAACTGTAAGGCCTGAAGAAGTTTTAGAGATAGCTTTGCATATGGTTCAGACATCGTACAAGAATTACCTTTACAAATGTGATCAACTGAAGTCCATACGGCAGGATTTAACTGTGCAAAGGATACGAAATGAACTAACTGTCAAGGTGTATGAAGCCCATGGACGATTGGCATTAGAAGCTGGCGATCTACCTGAGTTTAATCAGTGCCAATCTCAGCTGAAAAGACTTTATGCAGAAGGAATCAAAGGATGTCAGATGGAGTTCTCAGCTTATGGTCTACTTTGTGTTATTTTTCATTCAAATAGTAAAAGAGATCTTTTATCATCAATAAACAGCTTGTCTAATGAGGCAAAACAGGATGAAACTGTAAAGCATGCTCTTGCAGTGCACTCTGCTGTTTCATCTGGAAATTATGTGCTGTATTTTAGATTATATAAGGCGGCTTCAAGCTTGATTACCTGCCTTATGGATCTCCATGTAGAAAAGATGAGGTTTGAAGCAATGAAATGCATTTCTAAATCATACAGACCATCAGTTCCTGTTACCTATATAGCACATGTATTGGGCTTCTCAACTTCAGTACAAACAGGTTGTGATGATGAAAAAGGTGCAAATGGACTAGATGAATGTGAAGAATGGTTGCGGACCCATGGTGCTGTTCTCTTTGTCGAAAACAATACAGAATTACAAGTGGATACAAAGGCTTCTTCATCCTCACTGCACATGCCAGATCCTGATGACGCTGTTGCGCATGGCGATGCAAACCTTGCTGTGGATGATTTCCTCGCTCGGACATCTTGATGCCACTCCTACGGCGAAACAACTTGAGTTGCATACATTTTTAAGATGTGAAGCCTCCCATAGAAATGTCAGGCAGCGACATTTTTTTCCTTTTTTTTCCAAAATCACTGAACGGCCAAAATCTTGGCGTAGTATATTGCAGGGCTAACTCTGATTCGACTGTTGGATTACCTTTTGTGCTCTAGGTTTGATATGCCCAGGCAAAAAAAAGAGGAAAAATTAACCTATAGTTTGATTGTTTAGGGTTGATGATCTTTGCATCCTCCAATTGTATTTTGTAAAGAGAGTCAATCGTTCTGAAGGAAAGTAGAGCGAGCGTTGTGTAACATATATATTTGTATTATTCGTTATTTGAAATAAGATATATATGTCTTCAAGCCCCTTTTATCAAATAAAATTTCATTTCATTCTCCTTATTGGGGTTTTGATTTTGTTTTGTACCAAAAATTACTTAGGGATTTGATTGGATATAAAAGTTTGTGCAAAGCTATTATATATGTAAGAAAATGATTTATGCAAGGATATCATAGTGTGTGCGCAATCATGCTAATGATTGATGCGGTTCATTTTTATTTTGTTGTGAGATGCACATGCATTTATGAATAGCATATTTTGATATTTGTATACTTTAATACTTTTGTTGTGGCTCTAAAAGTCCCAACTAGATTACCATATATTGGAGCATGCTATTAGAACAGTAGTGGTTCAGCTTTTTTAGTTAGAGTTTTGAAGAGTTTTTAAGTTGTGGTTGCAGCCAACTGATCGATCGCTTAAATTTTGTAAGTTTTGCATCCCATTTTATAACTTTCATGACGAGATATCCCTATTAATTTGATAAGTTTTGCCTTTGTTTATTATCCATTGGCCAAAATGCGATATGATTTACCAATTTTGTTCTTGCTGCAGGTTCTTGATAAATGGGTAGCAC

Network for GWHGAAEX002386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03399.15	SAC3_GANP	741	947	5.00E-23

Protein Sequence

>GWHPAAEX002386
MLSTVNQGSQPVAAVDPSFMERHSGDEVSQGNAPAFAGPYSWPASVAQVSVSWNYGANNGSLENAATSSSVHNYDPLRDSTGSEGVHAVMNSVPETTASSNVTATNGSQAYTGYAPYSNSTYAYGYDNVQYQNNYYGHPSHQACYTSYQQMGASQNSGSLYQPHSSFQNTGSFATPTSYSGAYFASDHQTTAGYPSNGYFDQNNYWNDGNAGTYSLQYANYPTSDTNSTTSANNTAASTYPYQQDCNQWSSNYGTPVPNVNYPPGSGSTFAGTVPTVSYPVQSASSGSLYVSNQPPPPGTTSWRGDLSPSTLPSQARNGPPALCSNGTWEEKAFTVQNYHHNQIPSNLPMPSDSKLPLYENHDGNEKTACSHDSSSSLQVLSTGQISQNLEQPLQFISAMDACRVSKMQIPTNPRIASSLAVGMPKLDKETSTNIAAAKPAYISIQEPKLNNQSPSSSNTDTIFKGAFPLSLRAYVERCFSRCKDDAQRAVNKLILSEIIAKAKDDGTLWTKNWDLELLFPLPTSNSNKAIQNILQTTVPSVSKFPSRRSKSRWEPVAEEKLDLKVAPVNHDSTKNVTWAENTQHKCRLSLAGVRMLDNMNNGRISMKFSLPEQPPISKTSQRPLKKSRFSDTNISENGNSTSDSDKEQELIKYYSSAITLENSPEERKRREHRSKRFEKGQEKQADIKQLKTKGAGVGSVYLRKASAILLAKGSDDQCRAVEDIFWDTLTVKGTCQDVEKRYLRLTSAPDPATVRPEEVLEIALHMVQTSYKNYLYKCDQLKSIRQDLTVQRIRNELTVKVYEAHGRLALEAGDLPEFNQCQSQLKRLYAEGIKGCQMEFSAYGLLCVIFHSNSKRDLLSSINSLSNEAKQDETVKHALAVHSAVSSGNYVLYFRLYKAASSLITCLMDLHVEKMRFEAMKCISKSYRPSVPVTYIAHVLGFSTSVQTGCDDEKGANGLDECEEWLRTHGAVLFVENNTELQVDTKASSSSLHMPDPDDAVAHGDANLAVDDFLARTS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.840
SRP064423	SRR2545915	Juvenile tuber	29.700
SRP108465	SRR5643513	five period of Gastrodia elata	23.020
	SRR5643514	five period of Gastrodia elata	22.990
	SRR5643515	five period of Gastrodia elata	27.220
	SRR5643524	five period of Gastrodia elata	26.910
	SRR5643525	five period of Gastrodia elata	32.900
	SRR5643528	five period of Gastrodia elata	28.630
	SRR5643658	five period of Gastrodia elata	31.780
	SRR5643659	five period of Gastrodia elata	23.150
	SRR5643660	five period of Gastrodia elata	22.510
	SRR5643661	five period of Gastrodia elata	21.340
	SRR5643662	five period of Gastrodia elata	24.040
	SRR5643663	five period of Gastrodia elata	23.100
	SRR5643664	five period of Gastrodia elata	26.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.070
SRP279888	Gastro	Gastrodia elata tuber	26.36
	Juven	Juvenile tuber	32.78
	Mother_Gastro	Mother tuber of Gastrodia elata	42.52
	Mother_Juven	Mother tuber of Juvenile	41.14