Gene detail

Detail information of GWHGAAEX002391/evm.TU.scaffold_12.163

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|430744371\|ref\|YP_007203500.1\|	7.00E-26	serine/threonine protein kinase [Singulisphaera acidiphila DSM 18658]
KOG	KOG0605	0	NDR and related serine/threonine kinases
nr	gi\|743792844\|ref\|XP_010923780.1\|	0	PREDICTED: serine/threonine-protein kinase 38-like [Elaeis guineensis]
Swissprot	tr\|F4HYG2\|IRE3_ARATH	4.00E-81	Probable serine/threonine protein kinase IRE3 {ECO:0000305}
trEMBL	tr\|D7TKR6\|D7TKR6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31088.3}
TAIR	AT3G23310	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	7325986	7361242	-

Transcript Sequence
>GWHTAAEX002391 AGCAGGGGCTGTTTCGTCCTTTCCTGCAGATTTTTAAGGGATGGGCAGGCTCTTACTCCAGCTAGCCAGTTGGAGACGAGAAGGCTCCTGGAAGAAACAGACATCGAGTCAACAGAAGGGAAGACCGCATCGCTCTAAGCTTATAGAATCAAGAAGATATTCCGGCGGGAGATACACGGCGGCGTTGAATTTTGGTGCATTCGTGAGGTCTCCATCACTTTAGCTGTCTAGGGTTTTCGCCTAAAGGGGAGTGGAATTGAATCCCCTGACTTGGTTGCGAGTGCCCTGAGGAAATCGAATGATGGCGTCGTGAGTCTGATGGATTCTACCGGCTGCTGGTTTAGGAAATTTCAGCCAAGAGAGGGTAAAGTAAAGCCTGTTCTGTCTAAAAAAAGGGAAATGGAGAGCTCGAAGGATGCACAGAAACCCCCACTCGATGAGGCGCCTCCCTCGGATATAACAAAGCAGAGGGTTGCAGCTGCCAAGCAGTTTATAGAGAATCACTATAAGAACCAGATGAAGAGCTTGCAAGAACGTAAGGAGAGAAGGTGGATCTTAGAGAAGAAGCTTGCTGATGCTAACATTTCTGAGGAAGAGCAAAACAATCTCATGAAGGACTTTGAGAAAAAGGAAACAGAATTGATGCGGTTCCAGAGGCATAAAATGGGAGTTGAAGATTTTGAGCTACTCACAATTATTGGCCGGGGGGCTTTTGGAGAGGTGAGACTTTGTAGGGAAAAAACCACAGGGCATGTGTATGCGATGAAAAAGCTTGAAAAATCTGAAATGCTTCGTAGGGGCCAGGTTGAACATGTAAAGGCTGAAAGGAATCTTCTTGCAGAGGTTGACAGTGATTGCATAGTCAAGCTTTATTGCTCTTTCCAGGATGATGAGTTTTTATATCTCATCATGGAATATCTTCCTGGTGGGGACATGATGACTTTGCTAATGCGCAAAGATACACTTACTGAAGAAGAGGCCAAGTTTTATGTTGGTCAGACAGTATTGGCAATTGAGTCAATTCACAAGCATAACTACATCCATAGGGATATTAAGCCTGACAACCTGTTACTTGATCGAGATGGCCATATGAAATTATCAGATTTTGGATTGTGCAAGCCCTTGGATTGTAGCAACTTTCCTAATTTTAGTGAACCTGACTATACATTAGGCGTTAATCCCATACCCATTTTAAACAGTGACAAAACTTTGAACAGCATTTATTCTGCACAGAGAACCCAACAAGAGCAGCTGCTGCACTGGCAAAAGAACAGGAGAATGCTAGCTTATTCAACAGTTGGTACTCCTGATTACATTGCTCCCGAAGTTCTTCTGAAAAAAGGATATGGTATGGAGTGCGATTGGTGGTCACTCGGAGCAATCATGTATGAAATGCTTGTGGGATACCCTCCATTCTATTCGGAGGAACCGATGTCCACCTGCAGAAAGATAGTTAATTGGAAAACTCACTTAAAATTTCCGGTGGAGGCAAAGCTGTCCCCTGAAGCTAAAGACCTAATAACCAGGTTGTTATGCAATGTGGAGAGGAGGCTGGGAACTAGAGGAGCTCATGAAATTAAGGCACACCCTTGGTTTAAGGATGTTAACTGGAACAGACTTTATCGGATGGAAGCTGCATTCAAGCCCGAGGTTAATGATGAGTTAGATACTCAAAACTTTGAGAAATTTGAAGAGACGACAGCTTCATTGCAAACTTCTTCAAAGTCTGGACCTTGGAGGAAGATGCTTCCATCCAAGGACGTGAATTTTGTGGGGTATACCTATAAGAATCGTGCCATCGTTAACGATTATGAGCTACCTGGCATCGCCCAGTTGAAGAAAAAAAGCACCAAGCCCAAGAGACCCTCGATCAAAACCTTATTTGAAACAGAGTCTCCCACGGCAAACCAGCCCAACCATGGGAGCTTTCTTAATCTTCTTCCTCCGCAACTGGAGGTTTCAGAGAGCCCGGAGGCGTCTCCTTCTAGGACTTGGACCCCAGTATCGACCAAAGACACCAAATAATTTCATTCGCATTTTCACATATGAGACTCAGGCTCAGCACAGGCAAACAGAACGGCAGCCAGCTTTGTATATTAAAAGGATTATGTATGTATGAACGAATGGATAAATGAATTCCCATTTAGCTTAGTCTCGTGTTCATGCTGTATTCTCGAGTTAAAATGGTGTATATATCTGTATTAACTTGTGTTAATCTGGCAATGATGCTTGCCCTTGTGCCTTGGAATGAGTTTCCCATGTATTGATTTCTTCTCAGGATATTCCTTCTAAAATAAAATAATATTAATTTTTTTTCTTTTTCTT

Network for GWHGAAEX002391

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	122	271	4.00E-43
PF00069.24	Pkinase	323	426	1.90E-21
PF00433.23	Pkinase_C	445	489	4.70E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004674	Molecular Function	protein serine/threonine kinase activity
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.410
SRP064423	SRR2545915	Juvenile tuber	63.400
SRP108465	SRR5643513	five period of Gastrodia elata	80.520
	SRR5643514	five period of Gastrodia elata	92.350
	SRR5643515	five period of Gastrodia elata	80.520
	SRR5643524	five period of Gastrodia elata	93.610
	SRR5643525	five period of Gastrodia elata	71.830
	SRR5643528	five period of Gastrodia elata	71.240
	SRR5643658	five period of Gastrodia elata	74.470
	SRR5643659	five period of Gastrodia elata	67.600
	SRR5643660	five period of Gastrodia elata	71.380
	SRR5643661	five period of Gastrodia elata	72.070
	SRR5643662	five period of Gastrodia elata	64.620
	SRR5643663	five period of Gastrodia elata	55.840
	SRR5643664	five period of Gastrodia elata	54.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	60.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	57.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	77.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	77.860
SRP279888	Gastro	Gastrodia elata tuber	63.22
	Juven	Juvenile tuber	109.07
	Mother_Gastro	Mother tuber of Gastrodia elata	116.36
	Mother_Juven	Mother tuber of Juvenile	107.21