Detail information of GWHGAAEX002395/evm.TU.scaffold_12.171


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672183114|ref|XP_008811826.1|6.78E-73PREDICTED: transcription factor PIF4-like isoform X4 [Phoenix dactylifera]
Swissprottr|Q8GZM7|PIF1_ARATH3.00E-34Transcription factor PIF1
trEMBLtr|A0A067E1P5|A0A067E1P5_CITSI4.00E-59Uncharacterized protein {ECO:0000313|EMBL:KDO44796.1} (Fragment)
TAIRAT2G201808.00E-34phytochrome interacting factor 3-like 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000976922737695177+
Transcript Sequence

Network for GWHGAAEX002395

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.25HLH2232691.10E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
K16189PIF4 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.470
SRR2545915Juvenile tuber8.270
SRP108465SRR5643513five period of Gastrodia elata4.380
SRR5643514five period of Gastrodia elata9.490
SRR5643515five period of Gastrodia elata3.370
SRR5643524five period of Gastrodia elata6.180
SRR5643525five period of Gastrodia elata0.900
SRR5643528five period of Gastrodia elata0.210
SRR5643658five period of Gastrodia elata0.160
SRR5643659five period of Gastrodia elata4.870
SRR5643660five period of Gastrodia elata2.650
SRR5643661five period of Gastrodia elata3.670
SRR5643662five period of Gastrodia elata1.170
SRR5643663five period of Gastrodia elata1.910
SRR5643664five period of Gastrodia elata0.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.530
SRR6049655Rhizomagastrodiae_C368-T10_good_110.510
SRR6049656Rhizomagastrodiae_C368-T07_good_110.480
SRR6049657Rhizomagastrodiae_C368-T07_good_16.380
SRR6049658Rhizomagastrodiae_C368-T04_good_14.530
SRR6049659Rhizomagastrodiae_C368-T04_good_12.630
SRR6049660Rhizomagastrodiae_C368-T01_good_13.750
SRR6049661Rhizomagastrodiae_C368-T04_good_17.380
SRR6049662Rhizomagastrodiae_C368-T01_good_18.170
SRR6049663Rhizomagastrodiae_C368-T01_good_12.400
SRR6049664Rhizomagastrodiae_C368-T10_good_19.560
SRR6049665Rhizomagastrodiae_C368-T10_good_19.560
SRP279888GastroGastrodia elata tuber 2.41
JuvenJuvenile tuber7.29
Mother_GastroMother tuber of Gastrodia elata 1.27
Mother_JuvenMother tuber of Juvenile 3.43