Detail information of GWHGAAEX002398/evm.TU.scaffold_12.174
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 5.00E-64 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743803390|ref|XP_010926905.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Elaeis guineensis] |
| Swissprot | tr|Q9FL28|FLS2_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor) |
| trEMBL | tr|V9Q689|V9Q689_VITVI | 0 | Flagelling sensing 2 {ECO:0000313|EMBL:AHC08662.1} |
| TAIR | AT5G46330 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 7735138 | 7741004 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002398
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 31 | 70 | 7.00E-13 |
| PF13855.5 | LRR_8 | 123 | 182 | 1.30E-06 |
| PF00560.32 | LRR_1 | 219 | 241 | 0.035 |
| PF13855.5 | LRR_8 | 482 | 541 | 2.20E-07 |
| PF13855.5 | LRR_8 | 555 | 614 | 3.40E-08 |
| PF13855.5 | LRR_8 | 655 | 713 | 3.40E-07 |
| PF00560.32 | LRR_1 | 750 | 764 | 0.99 |
| PF00069.24 | Pkinase | 870 | 1152 | 2.50E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XII-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13420 | FLS2 | MAPK signaling pathway - plant | map04016 |
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.470 |
| SRR2545915 | Juvenile tuber | 4.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.790 |
| SRR5643514 | five period of Gastrodia elata | 5.100 | |
| SRR5643515 | five period of Gastrodia elata | 6.130 | |
| SRR5643524 | five period of Gastrodia elata | 3.290 | |
| SRR5643525 | five period of Gastrodia elata | 3.810 | |
| SRR5643528 | five period of Gastrodia elata | 7.510 | |
| SRR5643658 | five period of Gastrodia elata | 2.830 | |
| SRR5643659 | five period of Gastrodia elata | 10.620 | |
| SRR5643660 | five period of Gastrodia elata | 4.650 | |
| SRR5643661 | five period of Gastrodia elata | 7.690 | |
| SRR5643662 | five period of Gastrodia elata | 10.420 | |
| SRR5643663 | five period of Gastrodia elata | 8.770 | |
| SRR5643664 | five period of Gastrodia elata | 10.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.07 |
| Juven | Juvenile tuber | 2.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.61 | |
| Mother_Juven | Mother tuber of Juvenile | 3.46 |