Detail information of GWHGAAEX002409/evm.TU.scaffold_12.186
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209963873|ref|YP_002296788.1| | 4.00E-07 | glycosyl transferase family protein [Rhodospirillum centenum SW] |
| nr | gi|697112643|ref|XP_009610199.1| | 1.46E-179 | PREDICTED: glucan endo-1,3-beta-glucosidase 8-like [Nicotiana tomentosiformis] |
| Swissprot | tr|Q6NKW9|E138_ARATH | 1.00E-166 | Glucan endo-1,3-beta-glucosidase 8 (Precursor) |
| trEMBL | tr|M0TML3|M0TML3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P04600_001} |
| TAIR | AT1G64760 | 5.00E-166 | O-Glycosyl hydrolases family 17 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 8083877 | 8085722 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002409
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00332.17 | Glyco_hydro_17 | 39 | 360 | 6.60E-64 |
| PF07983.12 | X8 | 383 | 457 | 5.70E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.170 |
| SRR2545915 | Juvenile tuber | 0.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.260 |
| SRR5643514 | five period of Gastrodia elata | 0.160 | |
| SRR5643515 | five period of Gastrodia elata | 0.160 | |
| SRR5643524 | five period of Gastrodia elata | 0.070 | |
| SRR5643525 | five period of Gastrodia elata | 0.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.700 | |
| SRR5643658 | five period of Gastrodia elata | 0.690 | |
| SRR5643659 | five period of Gastrodia elata | 0.070 | |
| SRR5643660 | five period of Gastrodia elata | 0.040 | |
| SRR5643661 | five period of Gastrodia elata | 0.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.080 | |
| SRR5643663 | five period of Gastrodia elata | 0.090 | |
| SRR5643664 | five period of Gastrodia elata | 0.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.04 |
| Juven | Juvenile tuber | 0.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.96 | |
| Mother_Juven | Mother tuber of Juvenile | 0.20 |