Gene detail

Detail information of GWHGAAEX002412/evm.TU.scaffold_12.189

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743775100\|ref\|XP_010917924.1\|	7.64E-54	PREDICTED: uncharacterized protein LOC105042421 [Elaeis guineensis]
Swissprot	tr\|Q8GYX9\|WDL1_ARATH	3.00E-22	Protein WVD2-like 1
trEMBL	tr\|M0TTW8\|M0TTW8_MUSAM	9.00E-53	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P26650_001}
TAIR	AT2G35880	2.00E-40	TPX2 (targeting protein for Xklp2) protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	8116856	8147205	-

Transcript Sequence
>GWHTAAEX002412 ATGAGCAACGGCGGAGACTCGACCGCCGGCCTCAGCCCCGACGGCTCCCTGGCGGCCAACAAGCACAGAAAATTTGGCTATGCTGTAGGCATCTTGACCGGCGGCATCCTCGTTCTCCTTGCAGCCATCTCCATCATGTTCTACTTCAGCACCCGCTACGCCGCTGCCGCGGCAAACGCCCAAGCAGACCATGAGGGCGGGCTCGACGAGGCCACCATGAAGAGCTGGCTTAGGGTGAGCTATGCCGAGGCCAAGCGACGGGGCCTGCGGGCGGGCGGCAGCAGAGTGCAGGCACCTTTTCCACGCCAGGTGCGTGGATCCATGGCTCAGGATGCGCCCGACGTGCCCAGTTTGCCGGGCATCGCCGATGCAGAGTTCCCTCGCAACTCCCTTGGCAGCGGTGGCTCCTCTCGCCATCTCAAGCATCAAGTTTCTGGCATAAGTTGTGCTGAGGATGCTGGAGACGGGCGAGCACAAGTTGTATCGCCTCCCAAAATGTCGTTGCCATGGACATCGAGGAATGTGAGATTCCGGTTGCTGGTGATCTCTGCCGGAATATCCCCGGCGATCCAGGAAGCTGAGGCTCTTCAACCCGCTGATCTCGTTCCCATTTGCGCCGAATCTAATCAACAATTTGCAGATTCTGATTTCCGACGGGATCTTGGCAGAGAGATCATTGTCCAGGACGAACAGATTGTTGAGCGTCGGCAGCCGGAAGATCCCCTTCGGGATTGGGCCGATCAAAGCGGATGTCCCTTCCAGCGCAGAGGGGAATGGGATAATCCCAGTCTGTCTACTGGAAACGGCTCCAGCGGTAGGATCGTAGTTGAATTTGCTTTTACTTCTGAGTTTGATTGTATGATGGAAGCTACTGACGGGGATGAATTAGAGCTGTCCATTAGTGATTTAGAGAAAGATTCGATTGTTAATATGCTGAAATCCATCGGCAACCATGATAATAATAATAATAATAATAATAATAAAACCACCAAAGTTGGCTATGACAGAGCTGAAGATAATGGAACTTGCGCCACACAAGCAAATGGAACCTCCGGTGTTCAATTTCAGAAAGCTAGAACAGATCAAGGTAAGGCCCAGAAGTTCAATAAGAATGGAGCACGAAAGAATGATACCACAGTTAATTCAAATAACCCAAAGGCCCGCTTTTCACAGAGCCTTTCCTTCTCCGCAAAAAGTTATCCATCATGTGGTCCAAAGAAGAGTACAACAGCTGTAAAACAAACAAATTTGGATGTGAATAGCCTCATTGCAAATAATTCAGAAATTGCTTCTCGTGGTGCACCTACTGCTCGTAATTTGAGCATTAAGGTTACAGAAAATGTATCCCAGTCACTGCCTACTGATACTGGTGCAGTGGATGATGGTGCTTCTTCTGTAGCCACACATCGTACTTCTCACACAATAGTCCAACGAAGGAGCGCTTCCAGCTTTTCTTTTAGGTTGGATGAGCGTGCAGAGAAAAGGAAGGAGTTTTTCATGAAATTGGAAGAGAAGATTCATGCTAAAGAAGTGGAAATAAACAGCATGCAGGCAAAGTCTAAGGAGAACCATGAGGCTGAAATTAGGCAGTTGAGGAAAAGCTTGGCCTTTAAGGCAACACCAATGCCAAGTTTTTATCAAGAACCTACTCCTAAAGCTGAATTGAAGAAGATCCCTCCGACAAGGCCCCGATCCCCGAAGCTGGGACGACACAAGCCCTCCGATGCTGCAGTGAGCCACTTCGAAGTTGAGGACTCGATCCAAATCCCGGAAACCAACCCTGACTTATTCAACAAGCATAATGGGGGACCCAAAAGAACCACTTCCCACAAGTCAATTTCAAGGCTTCCATCTCCAAAAACTGCTTCACTCAAGCCCGATTTGAAACTCACCGTTTCAAAGGCCAAACCAAGGTTCACTTCGCTCGAACCCGAAGTTGGGCGGGAAATTTCAGAAAGCCCGGACGAGGCCGAACACAGCAGTCTCATTTCGTTGCCCAAATTGCCGACCAGTCCCGGCGAAGCACGTATCGAAGAATGATGAATTAGATCCTCGAGTCCGCTTTCACAGTTTTAATTTGTGCCGATTTGTGAATAGCAATCATATTCATATGAAAATCTTCGTGTTACTTACATTAAGAAGTGAATTATTGATTATATTATCTCTCACATGGATTTGATTGCCCTTTCTTCACTCCTGGTAGAGAGAGTCAAGCGTTTTCCCGTTTGGTTGGGCGTGTGCCTTAATTAGGTGGATAGTCTATGTATTGTATATTATTTCATTCTGTTAATCTAGATGAACATAATTTGCTATTTGATAACTTTGTATATATGTAGAGCTGAATACTTTGGTAACAAGTTTGATGGCTGTTTTGAAGGGTAGAAATCATCTTTATATAAATGTGTTGACTGCTTATTTGCTGAATTCTAGCTTACTTCATTTAGTTCATGTTTTCA

Network for GWHGAAEX002412

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06886.10	TPX2	486	542	1.60E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.540
SRP064423	SRR2545915	Juvenile tuber	45.820
SRP108465	SRR5643513	five period of Gastrodia elata	33.380
	SRR5643514	five period of Gastrodia elata	27.420
	SRR5643515	five period of Gastrodia elata	29.260
	SRR5643524	five period of Gastrodia elata	29.090
	SRR5643525	five period of Gastrodia elata	34.370
	SRR5643528	five period of Gastrodia elata	32.610
	SRR5643658	five period of Gastrodia elata	37.240
	SRR5643659	five period of Gastrodia elata	32.800
	SRR5643660	five period of Gastrodia elata	26.380
	SRR5643661	five period of Gastrodia elata	29.880
	SRR5643662	five period of Gastrodia elata	23.330
	SRR5643663	five period of Gastrodia elata	25.380
	SRR5643664	five period of Gastrodia elata	25.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.450
SRP279888	Gastro	Gastrodia elata tuber	33.73
	Juven	Juvenile tuber	64.04
	Mother_Gastro	Mother tuber of Gastrodia elata	36.99
	Mother_Juven	Mother tuber of Juvenile	53.01