Detail information of GWHGAAEX002415/evm.TU.scaffold_12.192
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307155203|ref|YP_003890587.1| | 4.00E-78 | CaCA family calcium/proton antiporter [Cyanothece sp. PCC 7822] |
| KOG | KOG1397 | 0 | Ca2+/H+ antiporter VCX1 and related proteins |
| nr | gi|672108119|ref|XP_008783463.1| | 0 | PREDICTED: vacuolar cation/proton exchanger 2-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q5KQN0|CAX2_ORYSJ | 0 | Vacuolar cation/proton exchanger 2 |
| trEMBL | tr|M0RRU5|M0RRU5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P13150_001} |
| TAIR | AT1G55730 | 0 | cation exchanger 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 8161055 | 8204561 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002415
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01699.23 | Na_Ca_ex | 88 | 243 | 7.70E-22 |
| PF01699.23 | Na_Ca_ex | 278 | 418 | 4.50E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006816 | Biological Process | calcium ion transport |
| GO:0006812 | Biological Process | cation transport |
| GO:0015369 | Molecular Function | calcium:proton antiporter activity |
| GO:0008324 | Molecular Function | cation transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.270 |
| SRR2545915 | Juvenile tuber | 30.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.240 |
| SRR5643514 | five period of Gastrodia elata | 26.920 | |
| SRR5643515 | five period of Gastrodia elata | 18.480 | |
| SRR5643524 | five period of Gastrodia elata | 21.440 | |
| SRR5643525 | five period of Gastrodia elata | 28.020 | |
| SRR5643528 | five period of Gastrodia elata | 33.000 | |
| SRR5643658 | five period of Gastrodia elata | 33.180 | |
| SRR5643659 | five period of Gastrodia elata | 13.060 | |
| SRR5643660 | five period of Gastrodia elata | 14.170 | |
| SRR5643661 | five period of Gastrodia elata | 10.760 | |
| SRR5643662 | five period of Gastrodia elata | 14.060 | |
| SRR5643663 | five period of Gastrodia elata | 16.000 | |
| SRR5643664 | five period of Gastrodia elata | 12.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.34 |
| Juven | Juvenile tuber | 21.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.15 | |
| Mother_Juven | Mother tuber of Juvenile | 19.16 |