Detail information of GWHGAAEX002418/evm.TU.scaffold_12.195


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-29FOG: Predicted E3 ubiquitin ligase
nrgi|449492548|ref|XP_004159030.1|1.16E-33PREDICTED: RING-H2 finger protein ATL60-like [Cucumis sativus]
Swissprottr|Q8L9T5|ATL2_ARATH5.00E-30RING-H2 finger protein ATL2
trEMBLtr|A0A0A0K6T2|A0A0A0K6T2_CUCSA4.00E-34Uncharacterized protein {ECO:0000313|EMBL:KGN45435.1}
TAIRAT3G167202.00E-29TOXICOS EN LEVADURA 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000982316818232757+
Transcript Sequence

Network for GWHGAAEX002418

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2971401.40E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.100
SRR2545915Juvenile tuber0.440
SRP108465SRR5643513five period of Gastrodia elata10.730
SRR5643514five period of Gastrodia elata34.910
SRR5643515five period of Gastrodia elata21.990
SRR5643524five period of Gastrodia elata24.310
SRR5643525five period of Gastrodia elata1.050
SRR5643528five period of Gastrodia elata1.990
SRR5643658five period of Gastrodia elata0.560
SRR5643659five period of Gastrodia elata1.400
SRR5643660five period of Gastrodia elata0.800
SRR5643661five period of Gastrodia elata3.040
SRR5643662five period of Gastrodia elata1.240
SRR5643663five period of Gastrodia elata0.840
SRR5643664five period of Gastrodia elata0.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.550
SRR6049655Rhizomagastrodiae_C368-T10_good_113.150
SRR6049656Rhizomagastrodiae_C368-T07_good_115.790
SRR6049657Rhizomagastrodiae_C368-T07_good_19.750
SRR6049658Rhizomagastrodiae_C368-T04_good_113.950
SRR6049659Rhizomagastrodiae_C368-T04_good_111.820
SRR6049660Rhizomagastrodiae_C368-T01_good_16.850
SRR6049661Rhizomagastrodiae_C368-T04_good_17.370
SRR6049662Rhizomagastrodiae_C368-T01_good_133.840
SRR6049663Rhizomagastrodiae_C368-T01_good_118.670
SRR6049664Rhizomagastrodiae_C368-T10_good_144.990
SRR6049665Rhizomagastrodiae_C368-T10_good_144.990
SRP279888GastroGastrodia elata tuber 0.22
JuvenJuvenile tuber2.98
Mother_GastroMother tuber of Gastrodia elata 10.55
Mother_JuvenMother tuber of Juvenile 14.68