Detail information of GWHGAAEX002419/evm.TU.scaffold_12.196
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|431798421|ref|YP_007225325.1| | 2.00E-46 | pectin methylesterase [Echinicola vietnamensis DSM 17526] |
| nr | gi|672184178|ref|XP_008812392.1| | 0 | PREDICTED: pectinesterase-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SMY6|PME45_ARATH | 7.00E-162 | Pectinesterase 45 |
| trEMBL | tr|B9RR24|B9RR24_RICCO | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT4G33230 | 3.00E-161 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 8243995 | 8246760 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002419
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 74 | 222 | 1.30E-28 |
| PF01095.18 | Pectinesterase | 286 | 580 | 5.40E-124 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.040 |
| SRR5643514 | five period of Gastrodia elata | 0.890 | |
| SRR5643515 | five period of Gastrodia elata | 0.450 | |
| SRR5643524 | five period of Gastrodia elata | 0.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.060 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.02 | |
| Mother_Juven | Mother tuber of Juvenile | 0.02 |