Detail information of GWHGAAEX002425/evm.TU.scaffold_12.202
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521467764|ref|YP_008155216.1| | 1.00E-110 | 2-hydroxy-acid oxidase [Sorangium cellulosum So0157-2] |
| KOG | KOG0538 | 7.00E-176 | Glycolate oxidase |
| nr | gi|672161298|ref|XP_008800459.1| | 0 | PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LJH5|GLO4_ARATH | 2.00E-176 | Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 |
| trEMBL | tr|V4RYA7|V4RYA7_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR39983.1} |
| TAIR | AT3G14130 | 7.00E-176 | Aldolase-type TIM barrel family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 8497263 | 8543076 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002425
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01070.17 | FMN_dh | 37 | 376 | 3.00E-132 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0010181 | Molecular Function | FMN binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.690 |
| SRR2545915 | Juvenile tuber | 10.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.620 |
| SRR5643514 | five period of Gastrodia elata | 20.300 | |
| SRR5643515 | five period of Gastrodia elata | 17.470 | |
| SRR5643524 | five period of Gastrodia elata | 18.640 | |
| SRR5643525 | five period of Gastrodia elata | 12.450 | |
| SRR5643528 | five period of Gastrodia elata | 11.700 | |
| SRR5643658 | five period of Gastrodia elata | 13.310 | |
| SRR5643659 | five period of Gastrodia elata | 14.300 | |
| SRR5643660 | five period of Gastrodia elata | 14.610 | |
| SRR5643661 | five period of Gastrodia elata | 12.640 | |
| SRR5643662 | five period of Gastrodia elata | 17.790 | |
| SRR5643663 | five period of Gastrodia elata | 18.200 | |
| SRR5643664 | five period of Gastrodia elata | 19.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.53 |
| Juven | Juvenile tuber | 10.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.87 | |
| Mother_Juven | Mother tuber of Juvenile | 8.65 |