Detail information of GWHGAAEX002430/evm.TU.scaffold_12.209
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|334335977|ref|YP_004541129.1| | 9.00E-14 | serine/threonine protein kinase [Isoptericola variabilis 225] |
| nr | gi|695023546|ref|XP_009398949.1| | 0 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q3E991|Y5269_ARATH | 1.00E-165 | Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 (Precursor) |
| trEMBL | tr|I1MS93|I1MS93_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05560.1} |
| TAIR | AT3G42880 | 1.00E-174 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 8792332 | 8798158 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002430
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 22 | 61 | 3.40E-09 |
| PF00069.24 | Pkinase | 349 | 608 | 2.00E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.850 |
| SRR2545915 | Juvenile tuber | 0.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.750 |
| SRR5643514 | five period of Gastrodia elata | 2.400 | |
| SRR5643515 | five period of Gastrodia elata | 2.280 | |
| SRR5643524 | five period of Gastrodia elata | 2.800 | |
| SRR5643525 | five period of Gastrodia elata | 3.790 | |
| SRR5643528 | five period of Gastrodia elata | 3.760 | |
| SRR5643658 | five period of Gastrodia elata | 3.770 | |
| SRR5643659 | five period of Gastrodia elata | 2.530 | |
| SRR5643660 | five period of Gastrodia elata | 2.400 | |
| SRR5643661 | five period of Gastrodia elata | 3.060 | |
| SRR5643662 | five period of Gastrodia elata | 3.140 | |
| SRR5643663 | five period of Gastrodia elata | 3.730 | |
| SRR5643664 | five period of Gastrodia elata | 2.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.15 |
| Juven | Juvenile tuber | 2.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.89 | |
| Mother_Juven | Mother tuber of Juvenile | 5.12 |