Detail information of GWHGAAEX002432/evm.TU.scaffold_12.211


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|288932799|ref|YP_003436859.1|4.00E-25translation initiation factor, aIF-2BII family [Ferroglobus placidus DSM 10642]
KOGKOG14650Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7)
nrgi|743850456|ref|XP_010939892.1|0PREDICTED: translation initiation factor eIF-2B subunit beta isoform X2 [Elaeis guineensis]
Swissprottr|Q948X8|MTNA_TOBAC3.00E-14Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_03119}
trEMBLtr|M5X1B4|M5X1B4_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ19271.1}
TAIRAT3G073000NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000988741708903675+
Transcript Sequence

Network for GWHGAAEX002432

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01008.16IF-2B193891.80E-64
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03754EIF2B2 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0044237Biological Processcellular metabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.220
SRR2545915Juvenile tuber32.540
SRP108465SRR5643513five period of Gastrodia elata14.290
SRR5643514five period of Gastrodia elata15.310
SRR5643515five period of Gastrodia elata16.530
SRR5643524five period of Gastrodia elata18.140
SRR5643525five period of Gastrodia elata23.720
SRR5643528five period of Gastrodia elata21.740
SRR5643658five period of Gastrodia elata23.650
SRR5643659five period of Gastrodia elata17.000
SRR5643660five period of Gastrodia elata21.010
SRR5643661five period of Gastrodia elata18.880
SRR5643662five period of Gastrodia elata25.530
SRR5643663five period of Gastrodia elata21.560
SRR5643664five period of Gastrodia elata25.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.340
SRR6049655Rhizomagastrodiae_C368-T10_good_125.590
SRR6049656Rhizomagastrodiae_C368-T07_good_128.600
SRR6049657Rhizomagastrodiae_C368-T07_good_135.270
SRR6049658Rhizomagastrodiae_C368-T04_good_136.370
SRR6049659Rhizomagastrodiae_C368-T04_good_143.810
SRR6049660Rhizomagastrodiae_C368-T01_good_133.320
SRR6049661Rhizomagastrodiae_C368-T04_good_133.360
SRR6049662Rhizomagastrodiae_C368-T01_good_127.600
SRR6049663Rhizomagastrodiae_C368-T01_good_131.410
SRR6049664Rhizomagastrodiae_C368-T10_good_122.580
SRR6049665Rhizomagastrodiae_C368-T10_good_122.580
SRP279888GastroGastrodia elata tuber 37.40
JuvenJuvenile tuber30.34
Mother_GastroMother tuber of Gastrodia elata 28.48
Mother_JuvenMother tuber of Juvenile 29.78