Detail information of GWHGAAEX002437/evm.TU.scaffold_12.216
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3334 | 3.00E-61 | Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) |
| nr | gi|743839109|ref|XP_010936906.1| | 2.66E-92 | PREDICTED: transcription initiation factor TFIID subunit 9 [Elaeis guineensis] |
| Swissprot | tr|Q9SYH2|TAF9_ARATH | 9.00E-62 | Transcription initiation factor TFIID subunit 9 |
| trEMBL | tr|M0TGM8|M0TGM8_MUSAM | 4.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11400_001} |
| TAIR | AT1G54140 | 3.00E-61 | TATA binding protein associated factor 21kDa subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 9045195 | 9054137 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002437
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02291.14 | TFIID-31kDa | 38 | 160 | 1.10E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03133 | TAF9B, TAF9 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.820 |
| SRR2545915 | Juvenile tuber | 46.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 69.190 |
| SRR5643514 | five period of Gastrodia elata | 57.770 | |
| SRR5643515 | five period of Gastrodia elata | 68.300 | |
| SRR5643524 | five period of Gastrodia elata | 54.500 | |
| SRR5643525 | five period of Gastrodia elata | 105.440 | |
| SRR5643528 | five period of Gastrodia elata | 88.730 | |
| SRR5643658 | five period of Gastrodia elata | 104.020 | |
| SRR5643659 | five period of Gastrodia elata | 61.970 | |
| SRR5643660 | five period of Gastrodia elata | 63.060 | |
| SRR5643661 | five period of Gastrodia elata | 69.050 | |
| SRR5643662 | five period of Gastrodia elata | 69.800 | |
| SRR5643663 | five period of Gastrodia elata | 63.370 | |
| SRR5643664 | five period of Gastrodia elata | 68.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 114.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 63.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 61.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 56.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 65.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 57.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 73.49 |
| Juven | Juvenile tuber | 85.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 125.17 | |
| Mother_Juven | Mother tuber of Juvenile | 119.26 |