Detail information of GWHGAAEX002438/evm.TU.scaffold_12.217
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113475254|ref|YP_721315.1| | 0 | heavy metal translocating P-type ATPase [Trichodesmium erythraeum IMS101] |
| KOG | KOG0207 | 0 | Cation transport ATPase |
| nr | gi|672110793|ref|XP_008797345.1| | 0 | PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|B9DFX7|HMA8_ARATH | 0 | Copper-transporting ATPase PAA2, chloroplastic (Precursor) |
| trEMBL | tr|M0TV14|M0TV14_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P30620_001} |
| TAIR | AT4G33520 | 0 | P-type ATP-ase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 9056747 | 9125823 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002438
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00403.25 | HMA | 73 | 129 | 3.40E-08 |
| PF00122.19 | E1-E2_ATPase | 336 | 521 | 2.50E-48 |
| PF00702.25 | Hydrolase | 537 | 767 | 2.10E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17686 | copA, ctpA, ATP7 | MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0006812 | Biological Process | cation transport |
| GO:0019829 | Molecular Function | cation-transporting ATPase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.530 |
| SRR2545915 | Juvenile tuber | 16.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.340 |
| SRR5643514 | five period of Gastrodia elata | 15.910 | |
| SRR5643515 | five period of Gastrodia elata | 12.890 | |
| SRR5643524 | five period of Gastrodia elata | 15.610 | |
| SRR5643525 | five period of Gastrodia elata | 14.600 | |
| SRR5643528 | five period of Gastrodia elata | 28.800 | |
| SRR5643658 | five period of Gastrodia elata | 17.210 | |
| SRR5643659 | five period of Gastrodia elata | 8.080 | |
| SRR5643660 | five period of Gastrodia elata | 10.580 | |
| SRR5643661 | five period of Gastrodia elata | 8.790 | |
| SRR5643662 | five period of Gastrodia elata | 8.080 | |
| SRR5643663 | five period of Gastrodia elata | 12.030 | |
| SRR5643664 | five period of Gastrodia elata | 8.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.64 |
| Juven | Juvenile tuber | 8.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.77 | |
| Mother_Juven | Mother tuber of Juvenile | 14.15 |