Gene detail

Detail information of GWHGAAEX002441/evm.TU.scaffold_12.221

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427739375\|ref\|YP_007058919.1\|	4.00E-34	3' terminal RNA ribose 2'-O-methyltransferase Hen1 [Rivularia sp. PCC 7116]
KOG	KOG1045	0	Uncharacterized conserved protein HEN1/CORYMBOSA2
nr	gi\|672183676\|ref\|XP_008812123.1\|	0	PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9C5Q8\|HEN1_ARATH	0	Small RNA 2'-O-methyltransferase
trEMBL	tr\|M0S325\|M0S325_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P25680_001}
TAIR	AT4G20910	0	double-stranded RNA binding protein-related / DsRBD protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	9165880	9215523	-

Transcript Sequence
>GWHTAAEX002441 AATTGTGGTATCCCTTTTCGTCACCTCCCATCTGTATCTTACAAGAACATTTTTATCTTCTCTGCTTTTCTTATCCTTGTCGCATTCGTTTTTCTAATTTAAATCGGTAAACCCTACAAAACCGGAGCATTTCAGGATTTGCACGGTTTGGCCTTTTTCATCACTTTTGTGAAGTTGAGGTCCTATCTTAGATATGGATTTTCGCCAGGTCCCATTGTCCTTGTATGCTGTTTGGAAGATTTGGGGACTCAAGTAGATTCTGCATGAATCTTTCAACCAAACAAGCCCTTTAGTATTGAAGTCACTGGTTATTGGAAAGATGCTAGAAGCTGAAGAACTGCCCCCAGTTGCAAGGAAGCGGCCAGTGCTTGCTCCAAAGGCCATTATTCATCAAAATTTCGGTACCAAAGCGTCCTATAGGATTGAAGAAATAAAGCAACCAGTTGAGAATAGTTGCCCTGGTCTGGCTGTGGAACGGCTGGTTCGGAATCTATACAGGTGCTATTTGGATCTTCCAGAACTTTCTGTTATTTCTGACCCATTTCCAAAAAAGAAAGATGCCGAGCATGCTGCTGCAATGATCGCTATAGAGAAGTTAGGCATTCAACCAAAGGTAGATAATCTTACTACTCAGGAAGCAGTGGATGAATTAGTTGTACGTTTAGCGGGTTTCTTTATTAATGAGTTTCTTTATTCAGCCCATCCTCTGGTTGGACACATCAAAGCTGCACTTAGAAGAGCTGATGATCATTTTGGTATGATACCAATGTCTGCGATTGTTACATGTGACACAAAAATTAATACATTGTGCAAATTTATTAACCTGAAAGCTGAGTCAGATCCTCTATTGGTTTTATCTCTCATTTCGATGGCTGCCAAAATGTTTGCATCTGTACGAATTACTAGCGGTGAATTTTGGATAAAGAAACAAGGATCTTATCCTGCCGAGTTTTTTGAGTCGATCAAGAATTTTAAATCTGTATCAACGCAGAGTGCTCATGTTGAAGCAGTTCTTATTCCCTATTTGCATGATAGAGATGTTGAAACTCTATCTCTAAATTTTTCGGATAACCCATATTACATGGATGAAATTGCACAGAAACTTTATGCCAGGGACTCATCCCACATCCTTGTGTCACGTGCTATTGGAAAGGCTTCTTCAGAATTGAGATTATATTTCACTGCTCCAAATTTACCTCTTTTGACATCCGATTCAGCTATAGAAATATCTTCAATTGTTGATGGAAATCCCAAATTGGATAAAATTGTAAACAAAAGAGCTTCCTACTTTACTGGACAACACATTTACGGAGATGCAATTTTGGCGCTTGTTGGATACACGTGGAAGTCCTCTAACCTTTTCTATGAGGATGTCTCACTGAGTGCCTATTACAGGATGATTCTTGCAAAGTTGCCTGATGGACATTATAAGTTGTCCAGAGATGCAATACTTGGAGCAGAACTGCCTAATACATACACAACCCGCTCAAATTGGAAGGGTACGACACCACGGGAACTTCTTTGTGTTTTCTGCCGTCAACACTGGCTGTCAGAGCCTCTTTTCTCAATTAAATCTCTAGACCATTGGGAACCTTCTGCACAGTTTTATGAAGATGAAAAAAAATCTAAGTTAAGATCTGCTGATGAAGTTGTGAATGTAAATGGGGACAAATCCAATCTTATGTGCAGAGACTTCGATAGATCCACTAGTGTCTTTAATTGTGAAATTAAAATACTATATAAGGGTCAGGATCCAGTGGTTAAATGTTCTTTTAATGAATCTAGCAGAAAAGAATATGATGCCATTCAGAGTGCTTCCTTAAAGGTCCTTTCCTGTTTCAACAAGTTCTTTAAGCAACCTGGCATGCCAGTTGAAAGGTTGTTGGAGTTTGAATGTGGTCACGACATCATTGTATATTCCAAAGATTTTTTTCAAGAACTTGTGAAATGTATGTCTATATTTGGTGTTGAAAGGATTAATAACTCTTCGATGTTACCTGCATCATCAAATGAGAATTGCACAAAGTATGAGAATAGCATGTTTTTTTGTAAAATTGATGGTCCAGATTCTGGCATTTTCCCATCTCCAGGCTCTCTAATCTCCATAAGTTATGCTATTGTATTAATGAAGAAAGACAAATCTTTGAAAGAAATTTTAGAAAGCAAAGATGTTTTTGAGTTTGAGATGGGTACTGGTGCTGTGATTAGTGAGCTTGAATCATGTGTGAGCCAACTGACAGTAAATCAATCTGCACAGTTTGTTGTAGAAGTGCCTTCTAGGCACTTGATCTTGTCTGCAGCTGGTCAGTCGGCCAAGCATCTTTTGCAATTATCTTTAAGCAACTGCCTTTTGGAGTACTCTGTCAAGTTATTGCAGGTTACAGAACCTTTAGAGGACAGAATTGAACAAGCTTTATTCAGTCCTCCTTTATCCAAACAGAGAGTAGAGTTTGCAGTGGGGTGTATCAATCAGTTGCATGCTTCCAGTTTGGTGGATTTTGGATGTGGATCAGGCTGCCTACTTGATTCTCTGTTGGATCATACGACAACCTTAGAAAAGATAGCAGGTGTAGACATATCACGTAAAAGCCTTGTTCGTGCTGCAAAGATTCTACATTTGAAGTTGAGCACAAACACCTCACGACAAAAAAACATTAGATCTGCTATTCTCTATGATGGTTCAATTACTGAATTTGATTCTCGCTTACGAGGGTTTGACATTGGTACTTGTTTAGAGGTCATTGAGCATATGGAAGAGGATCAAGCTTGTTTGTTTGGTGATGTTGTTCTAAGCTTCTTTTGTCCAGGAGTGCTTATTGTCTCTACACCCAACTTTGAGTACAACCCAATTCTACAGAGATCCTCATTGCCAAACAGAGAGGATCAGAGAGACAAACCCACATCTGCTAACTTACGGAATCATGATCACAAGTTTGAGTGGACAAGGCAGCAATTTCAGCACTGGGCGACCAATCTTGCAGAGAAACATAATTATAGTGTTGAGTTTAGTGGTGTTGGAGGCTCAGCTGACTTTGAACCGGGTTTTGCATCTCAAATTGCAGTATTCAGAAGGGCTTCAAATATATTAGAGAAACAATGCTTTAAAAATGTAGAATCATCTCAATCCTATGAAGTAATTTGGGAATGGAGTGCTGATTCTGCTTCTCTTTAATATTTTCTACTTCCATCTTACATTACTGATGTGACAGCTGACACATATTTTGTACACCGAGATTTAGTATACAAATTCTCCCCATTGAGGTATATATACTTCTTTTGTCAATCCTATTCAGAAGAAAAGTAACGCAATGTGGAAACTTTTGTAGTTCTTTAATATTTTCCTAGGAATTTGTTTCATATAATAACCAATAGAATCAAAGAATTTTGTTCTGCT

Network for GWHGAAEX002441

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13847.5	Methyltransf_31	723	838	9.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.000
SRP064423	SRR2545915	Juvenile tuber	10.100
SRP108465	SRR5643513	five period of Gastrodia elata	9.960
	SRR5643514	five period of Gastrodia elata	11.530
	SRR5643515	five period of Gastrodia elata	9.880
	SRR5643524	five period of Gastrodia elata	10.330
	SRR5643525	five period of Gastrodia elata	7.500
	SRR5643528	five period of Gastrodia elata	8.700
	SRR5643658	five period of Gastrodia elata	6.600
	SRR5643659	five period of Gastrodia elata	8.380
	SRR5643660	five period of Gastrodia elata	7.510
	SRR5643661	five period of Gastrodia elata	7.400
	SRR5643662	five period of Gastrodia elata	7.250
	SRR5643663	five period of Gastrodia elata	7.680
	SRR5643664	five period of Gastrodia elata	6.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.570
SRP279888	Gastro	Gastrodia elata tuber	6.87
	Juven	Juvenile tuber	12.90
	Mother_Gastro	Mother tuber of Gastrodia elata	9.86
	Mother_Juven	Mother tuber of Juvenile	14.45