Gene detail

Detail information of GWHGAAEX002445/evm.TU.scaffold_12.226

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428776982\|ref\|YP_007168769.1\|	0	translation initiation factor 2 (bIF-2) [Halothece sp. PCC 7418]
KOG	KOG1145	0	Mitochondrial translation initiation factor 2 (IF-2; GTPase)
nr	gi\|743855626\|ref\|XP_010941522.1\|	0	PREDICTED: translation initiation factor IF-2, chloroplastic-like [Elaeis guineensis]
Swissprot	tr\|Q9SHI1\|IF2C_ARATH	0	Translation initiation factor IF-2, chloroplastic (Precursor)
trEMBL	tr\|M4EB30\|M4EB30_BRARP	0	Translation initiation factor IF-2 {ECO:0000256\|RuleBase:RU000644}
trEMBL	tr\|M4EB30\|M4EB30_BRARP	3.00E-08	Translation initiation factor IF-2 {ECO:0000256\|RuleBase:RU000644}
TAIR	AT1G17220	0	Translation initiation factor 2, small GTP-binding protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	9257135	9287460	+

Transcript Sequence
>GWHTAAEX002445 GCCGGTGCTCCGCCTTCTCTTCGCTTCGCTTCGCCTCGCCGCCGATTTCTTCAACGCAGGTAGAAATTTTGATCCAGGGTCATAAGTTAATATTACTCATAGAGGAGATCCAAAATGAGCCCAAAATGTGTTTTTTTTTTCCCCTTATGATAAGCTAGAGGTCTACACTTGCCTCTTTATATGGGTTTATGCATGGAAATTCCCACAGGTGTGATGGTTTCTCCTGCTTCCCTTGCATCTCTGGGAAGCGCAAGAGGGTCATATTCTTCTCACCTCGAGGCATCGCCATTGATCCTGGCCAAAAGAAGAATCCATGTAGTTTCAAGGCTTAATTTTAATAACTCCTGTTGGAAACAGCGATGGGTTTTACAATACCGAGGTATTTCTTTTAAGTGCAACATTATCACAAACTTAATTGATGAGAAGGGGGTTTCTTCTTCCCTCGAGTCAGTATTTCTTGCTTGTAGTGCTGATAAGGAAGAGAATACTGATCTAATTCTCAAAGCTACCACAAATTCCGTTTCACATGATGAGCCAATTGGTCCTATAAAATTAAAAAATTATTCTGCATCATCAAATAACGGAGTTCTTACTGGAAAGAGGCTTGAAACTCGTGATGATAGAGAGACTGTGCTAAAGCCATTGCGGGAGGTGATGGGGAAGGCAGTGAAAGTGGACAAGCTGGAGACCGGGATGGTGGATAATCCAGCTAAATTGAATGATATTGAGATTAGGAGCAATGCTAAACAAAATGGTGGCTCTAAGCCTCATAGGTCTGTAAAAACTAACAATGCTGCTCGGAATTCAAAAACAATAAAGAATGTGTGGCGGAGGGGGGACCCGATGAAGAACATTCATAATGAAGTTAGGGAAGTTCCAAGGATTTCTAAAGAAGAATTAGAAGAGAGAAAGAGCCCTCTTGTATCCAGGACAAGTAAACAAGATCCTTCCTCTGCCAATGTTTTGAAACTTCAGAAACCTATTCCAGTTTCGCCCAATCCTGTACGAAGACAGCAAGCAAGCTGTTCTGTTACTCCTCTGCCTTCACACCAAACTATTGTATTGAAACCCCCCCTTGTGGGAGAATTAAAAGCAGTTATTACTGACAAGTTTGCATCAAAAGAACCAATTGCTGATTTGATTACTTCAGAAACTGTATTAGCAACCACAAAGCCCGTAAAGGGGCTTCTTTCAAAATCCAAGGAGCGCTGGAAGAAATCTAGCGTGGCTGGGGGTTTACAAAAAGGTATGATAGATGAAATTAATGTCATCACATCTGACGAGGATCCCATTATACATAAACATCACTTTGTAGAAAGTAGAAAACCAACTCTTATTGACAGGTTTTCAATGAAGAAAGCTGTTGTTGGTTCCATTGCTTCAGAAGGTGAATTAACACTTACAAAACCTATAAAGGGGCCTCCTACAAAGTTCAAGGAAGAGCATAGAAAGAAATTCAGTGTGGATGGGGATTTAGGAAAAAGAGAGGTTGATGATGATGATGTCGATATTATTGAGGAAGATCCCATCATACAGAAACCTCATTATACTAAACAAAGAAGACCAATTCTTATTGACAAGTTCTCATCAAAGAAATCAATTGGTGATTCCATTGTCTCAGAAGCTGTATTAGCATCTACTAAATCTGTAAAGGGGCCTTCTTCAAAATTGAAGGTGGAGCACAGTAAGAAGTCTAATAGTGATGTTGGTGGTTTGCGCAAAAGATTGGCAGAGGAAAATGATGCGGATATAATTGAGGAAGATGCTTTGGAGCTTAATGTGCCTATTTCTGCTGTAAGGAAAGGAAAAAAATGGACAAAGGCAAGCCGTAAAGCTGCAAGGCTTAAAGCAGCTAAAACAGATGCACCTGTTAAAGCAGAGATTCTTGAGATTGGAAATGAGGGCATGTTTATTGAGGAGCTAGCTTACAATCTGGCTGTCAATGCAGTAGAAATCACCGAGTACTTGTGTTCTAAGGGGATAAAATCTGATACAGTACGTGTTTTGGATAAAGACATGGTTAAAATGATATGCAAGGATTATGACGTGGAGGTTATTGAAGCTCAGGTTACACTGCAAGAGATGGCAAAGAAAAAGGAGATACTTGATGAAGAAGATTTGAACATGCTAGAAGTAAGGCCTCCGGTTATTACAATTATGGGTCATGTTGATCACGGAAAGACCACACTTCTAGACTGTATTCGCAATAGCAAGGTGGTGGCATCTGAGTTTGGTGGAATAACCCAAGGCATTGGAGCATATAAGGTTCAAGTTATTGTAGATTCAAAGCCTCAGTACTGTGTTTTTCTTGATACACCTGGCCATGAGGCATTTGGTGCAATGAGAGCTCGTGGTGCTAGAGTGACAGACATAACCATAATTGTGGTTGCTGCTGATGATGGGGTCCGCCCCCAAACAACCGAGGCCATAGCTCATGCAAAAGCAGCTGAGGTGCCAATTGTAATAGCAATAAACAAGATGGACAAGGATGGAGCTAATCCTGATAGAGTTATGCAAGAACTTTCTCATGCTGGTCTTATGCCAGAAGAGTGGGGTGGTCACATTCCTATGGTCAAGATTAGTGCTCTGAAAAATGAGAATGTGGATCAACTGTTAGAAACTGTCATGTTAGTTGCTGAGATGCAAGAGTTGAGGGCAAATCCTCATAGGAAAGCAAAAGGCACCTGCATTGAGGCAGGTCTTGAGAAACAAAGAGGACCTGTTTCCACATTTATCGTGCAAAATGGGACACTTCGAAAAGGTGACATTGTGGTGTGCGGTGAAGCTTTTGGAAAGGCACGTGCTTTATTCGATGATAGGGGGATTCGTGTTGATGAAGTTGGACCATCAATGGCTGTGCAGGTTATTGGTCTTAGCAATGTTCCTACAGCTGGTGACGAATTTGAGATTGCAAGCTCCCTTGACTTGGCACGACAAAAGGCCGAAACTTGTGCAGAATCTCTTCGGGCCTCCCGCTTAACTGCTAAAGCTGGGGAGACAAAGATTACTCTTTCTTCATTGGCTTCTGCTGTTTCAGCAGGGAAGCAGTCTGGAGTCGATAGGCATCAGCTGAATATTATCCTGAAGGCTGATGTTCAGGGCTCCATTGAAGCAATCAAACAGGCCATCCATGTGCTTCCGCAGGATAATGTCACTTTGAAATTCCTCCACAAAGCCCCAGGTGATGTAAGTGCAAGTGATGTCGATCTTGCCGTTGTTGCTAAGGCTATTATATTTGGTTTCAATGTGAAAGCCTTGGGGTCCGTTAAGAGCTATGCCGACAGAAAGAATGTTGAGATTCGATTGTATAGAGTTATATATGACCTCATTGATGAAATGCGAAATGCAATGGAAGGTCTTCTTGAGCTTGCCGAGGAACAAATTCCTATTGGAGTGGCGGAAGTGCGAGCTACTTTCAGTAGCGGAAGTGGGCGAGTGGCTGGATGCATGATAACTGAAGGGAAGCTCATGAAAGGCTGCGGTCTTCGAGTTATACGAAATGGGATGACAATTTACACTGGAGTAATTGTTTCTTTAAGGCGAATTAAGGAAGTGGTGGAGGAGGTTGGTGCAGGACTAGAATGTGGTGTCGGTGTGGACACTTTCTCGGATTGGGCCATTCAAGATGTCATTGAAGCCTTTGAAACAATTAAGAAAAGGCGGACTCTTGAAGAAGCCTCTGCCTCAGTTACAGCTGCATTGACTGGTGCTGGAATCGAGCGCTAAGAATGTACATACACGTCAGTGGCATGATGCTTCTGTAACTTGTGATCCAGGATCTATTCTTGTACTGCTAAAGAACCCAGATCAAGTTCTGCATCCTTCCACTGCCATACCTTCTGGTACCTTTGAGCTTAAGCTTGATATGATCGAAAGTTGGTCCAATACAGTTTTGTCACTTGTTTCATGTTTTCATGTAAATAGAATTTTTTTGCTTAGCTAAAGTATCAGCTTTATTTGTTTTATTTTTGTAGCAAAATTCATTCAACCCATTTTCTTGTTTAACATCCGTGGTTGTAACAAAGCTGAAGAAAAAGGATGAGCAAATTGATATAGTAGAAATATGATAGATAACCTTTTGTGCTTAAATCACCTGCCGAAATTGTGATGTACTATGTTGAATACAAAGGGCTGAAAATAATCCTAAGAGAAAAAAAAGCCCAGATTGACCCAGCAGTTTCTTTGATTTGAGTTCAAC

Network for GWHGAAEX002445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	657	817	4.00E-32
PF11987.7	IF-2	961	1053	2.70E-30

Protein Sequence

>GWHPAAEX002445
MGLCMEIPTGVMVSPASLASLGSARGSYSSHLEASPLILAKRRIHVVSRLNFNNSCWKQRWVLQYRGISFKCNIITNLIDEKGVSSSLESVFLACSADKEENTDLILKATTNSVSHDEPIGPIKLKNYSASSNNGVLTGKRLETRDDRETVLKPLREVMGKAVKVDKLETGMVDNPAKLNDIEIRSNAKQNGGSKPHRSVKTNNAARNSKTIKNVWRRGDPMKNIHNEVREVPRISKEELEERKSPLVSRTSKQDPSSANVLKLQKPIPVSPNPVRRQQASCSVTPLPSHQTIVLKPPLVGELKAVITDKFASKEPIADLITSETVLATTKPVKGLLSKSKERWKKSSVAGGLQKGMIDEINVITSDEDPIIHKHHFVESRKPTLIDRFSMKKAVVGSIASEGELTLTKPIKGPPTKFKEEHRKKFSVDGDLGKREVDDDDVDIIEEDPIIQKPHYTKQRRPILIDKFSSKKSIGDSIVSEAVLASTKSVKGPSSKLKVEHSKKSNSDVGGLRKRLAEENDADIIEEDALELNVPISAVRKGKKWTKASRKAARLKAAKTDAPVKAEILEIGNEGMFIEELAYNLAVNAVEITEYLCSKGIKSDTVRVLDKDMVKMICKDYDVEVIEAQVTLQEMAKKKEILDEEDLNMLEVRPPVITIMGHVDHGKTTLLDCIRNSKVVASEFGGITQGIGAYKVQVIVDSKPQYCVFLDTPGHEAFGAMRARGARVTDITIIVVAADDGVRPQTTEAIAHAKAAEVPIVIAINKMDKDGANPDRVMQELSHAGLMPEEWGGHIPMVKISALKNENVDQLLETVMLVAEMQELRANPHRKAKGTCIEAGLEKQRGPVSTFIVQNGTLRKGDIVVCGEAFGKARALFDDRGIRVDEVGPSMAVQVIGLSNVPTAGDEFEIASSLDLARQKAETCAESLRASRLTAKAGETKITLSSLASAVSAGKQSGVDRHQLNIILKADVQGSIEAIKQAIHVLPQDNVTLKFLHKAPGDVSASDVDLAVVAKAIIFGFNVKALGSVKSYADRKNVEIRLYRVIYDLIDEMRNAMEGLLELAEEQIPIGVAEVRATFSSGSGRVAGCMITEGKLMKGCGLRVIRNGMTIYTGVIVSLRRIKEVVEEVGAGLECGVGVDTFSDWAIQDVIEAFETIKKRRTLEEASASVTAALTGAGIER

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006413	Biological Process	translational initiation
GO:0003743	Molecular Function	translation initiation factor activity
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.820
SRP064423	SRR2545915	Juvenile tuber	23.950
SRP108465	SRR5643513	five period of Gastrodia elata	20.320
	SRR5643514	five period of Gastrodia elata	20.240
	SRR5643515	five period of Gastrodia elata	21.080
	SRR5643524	five period of Gastrodia elata	19.980
	SRR5643525	five period of Gastrodia elata	22.010
	SRR5643528	five period of Gastrodia elata	19.300
	SRR5643658	five period of Gastrodia elata	22.960
	SRR5643659	five period of Gastrodia elata	24.080
	SRR5643660	five period of Gastrodia elata	25.250
	SRR5643661	five period of Gastrodia elata	22.320
	SRR5643662	five period of Gastrodia elata	25.000
	SRR5643663	five period of Gastrodia elata	27.010
	SRR5643664	five period of Gastrodia elata	29.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.740
SRP279888	Gastro	Gastrodia elata tuber	27.46
	Juven	Juvenile tuber	33.88
	Mother_Gastro	Mother tuber of Gastrodia elata	22.78
	Mother_Juven	Mother tuber of Juvenile	31.94