Gene detail

Detail information of GWHGAAEX002446/evm.TU.scaffold_12.227

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427703571\|ref\|YP_007046793.1\|	2.00E-09	RRM domain-containing RNA-binding protein [Cyanobium gracile PCC 6307]
KOG	KOG4210	2.00E-62	Nuclear localization sequence binding protein
nr	gi\|743885870\|ref\|XP_010910016.1\|	8.15E-105	PREDICTED: nucleolin 2-like [Elaeis guineensis]
Swissprot	tr\|Q7XTT4\|NUCL2_ORYSJ	6.00E-85	Nucleolin 2
trEMBL	tr\|Q01JU3\|Q01JU3_ORYSA	3.00E-85	H0714H04.9 protein {ECO:0000313\|EMBL:CAH66982.1}
TAIR	AT3G18610	2.00E-62	nucleolin like 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	9291674	9299090	+

Transcript Sequence
>GWHTAAEX002446 AAATGCCACATCTAACGCTCACGCATACACGCTAGCCCTAACATTTCAATGGCTCGCTATAAAATCGAACGCTCTGGGTGCCAGCATTTTCTCACAAACTAAAAACTCTAGCTTTTCTTGCTGCTAGGGTTTTAGTTCGTTTTTAGCAGCCCCGCACCCGCCGCTGATTTCTAAATCTCCTTCGCGAAAGCAATCATCTACGTCGGCGGTGGCTTCCATATAAATTGATCTCGTCGCCTTCTACTATCTATATAATGGGTAAATCGAGCAAGAAGTCTAGTGTCGAGGTTGCTCCTGTTGCAGTTTCTGTTCCCCCTTCCAAGTCTGCAAAAAAGGGAAAGAGAGATGCAGAAGTTGTCTTAGAGAAACCGGCAAGTGCCAAAAAGCAGAAGAAAGAAGCAGTAGAAGTTCAGAAAAATCAAAACGCTGATAAGAAGTCCAAGAAGGTTCCCCCGCCAAAGAAGAAGGTTGAAACCAGTAGCTCAGATGATACATCATCAGATTCTGAAGAAGAGAAAGTCAAACCTGGAAAGTCATCTAAAAAGTTACCTGCTTCTGGGGTCAAGAATGGCAATGTTTCCGTTTCTAAAAAGAAAAAGGACTCCAGTGATGAATCTGAAAGCAGTTCTGATGAAGAAAATGAAGTCGAAACTGAAAATTCTACTAAAAAGTCACCTGCTTCTGCTTTGAAAAAGAAAAAGAGCTCGAGTGATGAAGAATCTGATAGCAGTTCTGATGAAGCGAATAAGCCAGTTGTTCCTTCAAAGAAGCCGCCACCAGTTGTTAAAAGTGTTAGTTCTAGTGAAACTTCAGAGAGCGAATCTGATGATGAGAAAGTTGCAGCAAAGCCAACATCTATTGTTGCAAAACCAGCTTCAAAGGCCACAATTAGTGTGCAAAAGAAGAAAGAAGAGTCAAGTGATAGCTCAGAGAGTGACTCTGATGATGAGAATGATGTTCCCAAAGTGTCTCAAACCATTAAAAAGGCTGCTGTTACCACTAAACCTAAAAAGAAAGAAGAGTCCAGCGACAGCTCAGAAAGTGATTCTGACTCTGACGAGAAACAGGCCACCACAGCCATCCCCCCAAAAAAGATAGAAGGCACAGAGAAGAAGCCACAGAACAAGGTTAAGGCTGAAGAGAGTTCTGATGATAGTTCGAATGAAAGTTCTGAGAGTGAGGAGGAACCACAGAGAAAGAAACTAAAAGTGCCTGAAACAGCTGGATTGAATGCTACCAAACCTGCCGTTAAGAGTGCCAAGAAAAAGAGCAGTAGCAGTGATGAAGATGAGGATGACAGCTCTGAAGAAAGTTCTGATGAGGAAACTCCAAAACAAATAATAAACAAGGCAGACAAGCCAATTAAGCAACCGGCCAAGAGTAGTTCTGATGATTCCTCTGAAGAGGACTCTTCAGATGAAAGTGAAGATGAGCAGCCAGTAAAGACGCCTGCAAAGAAGGACACTGATTTGAAGAAGAAAGATGCGCCTGCAGACCAAAATGCTAAAAAATTTGATAAGAAAGTGGAAAAGACCCCAGCTAGTAATCAAAGTGTAGCATCTGGTTCAAAGACGCTTTTTGTTGGAAACTTGCCCTTTGATGCTGGGGAAGACGACATAGTGGAGTTCTTCAAAGATGCTGGGGAAGTTGTTGATGTCCGATTTGCCAAATTTGATGACGGACAATCCAAGGGGTTTGGGCATGTTGAATTTGCCACAGCTGAAGGTGCACAGAAGGCATATAATGATTTAAATGGGCAAGAAATTATGGGTAGATCTGTAAGACTTGATTTTGCTCGTGAACGCGGACCTTATACCCCAAGTGGCGGAAGGGAAAATAGGTCATTCCAGAAATCTGGAGGTCAGAGCCATACCATTTTTGTGAGAGGTTTTGACAAGTCTCTTGAAATGGACAAGCTTGAAAGCTCACTTGGAGAGTTTTTTGGTTCTTGTGGAGAGATAACTCGCCTCTCCTTGCCTAGAGATTATGAAACTGGAGGTTCTAAAGGCATCGCATACATTGATTTCTCAGATGCTGATGCCTTTGGCAAAGCTCTAGAGCTTTCGGGTGCGGAGCTTGGTGGTTACGGCTTGACTGTGGATGAAGCCAAACCGAGAGAGACCCGCGATGGCGGAGGCCGTGGTGGCGGGAGAGATGGCTGGAGCGGTGGCAGGAATGGTGGACGGAGTGGTGGACGTGGTGGGAGAGATGGTGGTGGCCGTTCTGGCGGCGGTCGTTTTGGTGGTGGTGGTGGTGGCAGAGGGCGAGGTGGCCGTGGAGGCCGTTTTGGCGCGGGCACACACAGCCAAGGGAAGAAGACTACATTTGGCGATGATTAAAAGAGTTTCAGTGATGGTGTGCTTGCTTGTCTGCTCTCTAGAGGAAAAGATGGTGGAGAAGTGTGGCGTTCGTTCTATCAAACGTTTCTATTCTCTAGTTTTTATTCAAGTCAACTGTATGGCTGCCCAATTTTGCCTCGTCAATCTTGTCTGCGATATGTTGCTACTTTGAATTTTAGCTTGATATTTATATCTAGCTTATTTTCTTTTATTTAAATTGCTCTAGAACATTTAATTTTGCTTGTGTAAGGTGGTTAACCTTTGGATTCTTAGAATTTATTTTCAGTGCAGTTACTTGGTATTTATTAGATTTGTCTCTTGCCTCAA

Network for GWHGAAEX002446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	441	509	7.70E-19
PF00076.21	RRM_1	550	611	2.60E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	801.020
SRP064423	SRR2545915	Juvenile tuber	992.170
SRP108465	SRR5643513	five period of Gastrodia elata	470.040
	SRR5643514	five period of Gastrodia elata	390.540
	SRR5643515	five period of Gastrodia elata	387.390
	SRR5643524	five period of Gastrodia elata	380.560
	SRR5643525	five period of Gastrodia elata	169.390
	SRR5643528	five period of Gastrodia elata	156.750
	SRR5643658	five period of Gastrodia elata	128.890
	SRR5643659	five period of Gastrodia elata	753.920
	SRR5643660	five period of Gastrodia elata	742.890
	SRR5643661	five period of Gastrodia elata	908.620
	SRR5643662	five period of Gastrodia elata	969.870
	SRR5643663	five period of Gastrodia elata	826.620
	SRR5643664	five period of Gastrodia elata	1009.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	613.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	707.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	636.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	680.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	586.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	634.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	663.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	621.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	559.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	617.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	482.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	482.170
SRP279888	Gastro	Gastrodia elata tuber	944.94
	Juven	Juvenile tuber	735.81
	Mother_Gastro	Mother tuber of Gastrodia elata	159.73
	Mother_Juven	Mother tuber of Juvenile	337.97