Detail information of GWHGAAEX002447/evm.TU.scaffold_12.228
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743870638|ref|XP_010906095.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g59040 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9LYT2|PP287_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g59040 |
| trEMBL | tr|A0A097PKI5|A0A097PKI5_9ASPA | 0 | Tetratricopeptide repeat-like superfamily protein {ECO:0000313|EMBL:AIU48550.1} (Fragment) |
| TAIR | AT3G59040 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 9310931 | 9336202 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002447
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 139 | 166 | 0.0018 |
| PF13041.5 | PPR_2 | 169 | 216 | 2.10E-10 |
| PF01535.19 | PPR | 247 | 275 | 0.047 |
| PF13812.5 | PPR_3 | 297 | 356 | 6.80E-13 |
| PF13812.5 | PPR_3 | 404 | 464 | 7.90E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.500 |
| SRR2545915 | Juvenile tuber | 13.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.210 |
| SRR5643514 | five period of Gastrodia elata | 6.300 | |
| SRR5643515 | five period of Gastrodia elata | 6.230 | |
| SRR5643524 | five period of Gastrodia elata | 6.880 | |
| SRR5643525 | five period of Gastrodia elata | 0.520 | |
| SRR5643528 | five period of Gastrodia elata | 0.950 | |
| SRR5643658 | five period of Gastrodia elata | 0.890 | |
| SRR5643659 | five period of Gastrodia elata | 6.080 | |
| SRR5643660 | five period of Gastrodia elata | 6.230 | |
| SRR5643661 | five period of Gastrodia elata | 6.810 | |
| SRR5643662 | five period of Gastrodia elata | 7.540 | |
| SRR5643663 | five period of Gastrodia elata | 5.700 | |
| SRR5643664 | five period of Gastrodia elata | 6.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.30 |
| Juven | Juvenile tuber | 14.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.48 | |
| Mother_Juven | Mother tuber of Juvenile | 7.89 |