Gene detail

Detail information of GWHGAAEX002452/evm.TU.scaffold_12.234

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|260752364\|ref\|YP_003225257.1\|	2.00E-91	DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
KOG	KOG0333	0	U5 snRNP-like RNA helicase subunit
nr	gi\|743801943\|ref\|XP_010926478.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Elaeis guineensis]
Swissprot	tr\|Q53RK8\|RH21_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 21
trEMBL	tr\|F6I1B2\|F6I1B2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60728.1}
TAIR	AT2G33730	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	9481617	9485276	-

Transcript Sequence
>GWHTAAEX002452 TAGAAATTGGGTTCGCTATGGCATCACTTTGTATTTTTACCCAGATGCAACAACAATTGTGGAACCCTACATTCCCTTCCTGCGACGTACCAAGCGACGGCTTCTCTGCCTTCTTTTTTCCTTCCCTTCCGCCATTGAGGAATCGATGAAGCGTTCCTTGGACGACCGCGAACGGAAAGCTCCTTCCGGTGCTGCCGACGGGAAACCCCTCTTCATCTCCAAGACCGAGCGCCAGCGTCTCGCCATCCAGCGCCGCGAAGAGGAAGCTGCAGAGCAAAAGCGTCGTGCCCTCGATCTCGCCGAGCAATCTCGCCCCAAAACCTCTTCCGATCCTCCACCTTCTTCTTCCGCTGCCTCCGATTCCAACCACCGGTCGCATCGAGAACGTGACCGGGATCGAGAACGTGATCGGGATCGTGACCGCGATCGAGACCGCCGGCGCGATCGGGAGCGCGAGCGCGAGGAAGATGCTCGGAGCCGTGAGCGTTCTCGCATGGAGAAGCAGGCTGAGCGAGAGAAGGAAAAGGAACTGGATGCTATCAAAGAGCAGTATCTTGGGTCGAAGAAGCCTAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGCTTCTCCTTTGATTGGGAGAACACGGAGGATACTTCCCGTGACATGAATTCTCTCTACCAAAACCCCCACGAGGCCCGTCTTCTATTTGGGCGTGGATTCATCGCTGGTATAGACCGCCGCGAGCAAAAAAAGCAGGCTGCCAGGCACGAGAGAGAGACCCGCGAGGAGATTCGTCGGAAGGAAGGAGTGGAGGAGAAACCGGAGGAGGCCGCTGCACAGCGCAAGAAGGAGGCTGCTGCGGAGCTCTACGATGCCTTTGACATGCGTGTGGATCGGCATTGGACTGAGAAGAATCTCGAGGAAATGACCGAGAGGGATTGGCGCATCTTTCGTGAAGACTACAACATCTCTTACAAGGGCTCTCGTATCCCCAGACCGATGCGTAAATGGAGCGAGAGCAAGCTCAGCACTGAGCTTCTTAAGGCTGTTGAGAAAGCTAGCTACAAGAAGCCATCTCCCATACAGATGGCTGCTATTCCCCTAGGCTTGCAGCAACGTGATGTTATTGGCATAGCCGAGACTGGTTCAGGAAAGACTGCCGCTTTTGTCTTGCCCATGCTTATGTACATCACCCGGTTACCCCCTATGACAGAAGAAAATGAAGCTGAGGGCCCTTATGCAGTTGTCATGGCTCCTACAAGGGAGCTTGCCCAGCAGATTGAGGATGAAACTGTGAAATTTGCTCATTATTTGGGAATCAAGGTTGTTTCTATTGTCGGTGGCCAGTCCATAGAGGAGCAGGGGTTCAAACTCAGGCAGGGTTGTGAGGTTGTTATAGCCACTCCGGGGCGTCTTATTGACTGCTTGGAGCGCAGATATGCTGTCCTTAACCAGTGTAATTATGTTGTGCTTGATGAAGCTGACCGAATGATTGATATGGGTTTTGAACCTCAGGTTGTTGGTGTTTTGGATGCAATGCCTTCAAGCAATTTGAAGCCTGAGAATGAAGATGAGGAGTTAGATGAGAAGAAAATATATCGAACAACATACATGTTCAGTGCGACCATGCCTCCGGCCGTGGAGAGGTTAGCTCGGAAATATCTGAGGAATCCAGTGGTTGTAACTATAGGTACTGCTGGAAAGGCCACCGATCTTATTACCCAGCATGTGATCATGTTGAAAGAGTCTGAGAAGATGCCTAGACTTTTGAAGCTGCTAGATGAACTTGGCGATAAGACTGCTATTGTATTTTGTAATACAAAGAAAAATGCTGATATACGGGCCAAGGACTTAGACAAGCTTGGCTATAAGGTTACAACACTGCATGGGGGGAAATCACAAGAGCAGAGGGAGATCAGCCTTGAGGGATTCAGGAATAAGCGCTTTAACATTCTGGTAGCTACGGATGTTGCAGGACGTGGCATTGATATTCCAGATGTAGCTCATGTTATAAACTATGAGATGCCTAATACTATTGACATGTACACTCATCGCATTGGTCGAACTGGGCGAGCTGGGAAAACTGGTGTGGCAACTACGTTCTTGACCTTCGGTGATTCTGAGGTGTTTTATGATCTAAAACAGATGCTAATTCAGAGCAACAGCCCAGTACCGCCGGAGCTGGCTAGACATGAGGCTTCAAAGTTCAAGCCTGGAACTATTCCCGACAGGCCTCCACGGCGAAATGATACTGTATTTGCACATTGATCGAGTTTGTGTTTTAATACATTGATATTTTAGGATTTAACTGGCATTTGCAAGCTTCTGGAAACTACTATATGTTACTGTTCTTTCGATCTCATGCTTGCAAATGGTTTTCCTTCTGATTGGGAGGTTTCATAGCCTACATCACTAAGGTGAAGAAATTTCCTCTAGTTTAACCCACCCATGCTTTCAAAATGAGGTTATGGAGGAGACAAAACAAGTATACGATTTTGTTCTTTTGAAGCATCGACTTGTCAGAATGGTCTATGTGATTGCTATACATGCCTTGAACACGGAAATCACCTGACTGTTGAAGAGGTGAAGTTTCATTCAGCCAACAGTGATTGATTCAGTTAGTGCACTTGCTAAACAAATGAACTGATCGTTGGATCCAACTTTGAACTGAGTTGGTGAGTGGCAAGAGGCAGCATTTTTTGTGAGAAGCTGACTTTTGGGAGATGTATTTTTGATGCAAAATATTTAGGGGTGTTGTGTAATTTTGCATTACAATTCTTAGTTCTAGTCTCCAATGTATACATATGAAATACTCTCTTATATCTCAACTCTTATTTTTTCTTAAGAGCAAAATAAGATTTGGCGATTGTAATTTGTGAATACATGAAGTTTCTCTGTCAATAATAAATGTCTGTTTCTTGTACGATTTTTACATTTTTCTCAATGATGTTTGGAATACTATAAACCCAAATTATGCTTGGAC

Network for GWHGAAEX002452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	307	497	7.30E-49
PF00271.30	Helicase_C	532	640	9.80E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12858	DDX23, PRP28	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.620
SRP064423	SRR2545915	Juvenile tuber	29.210
SRP108465	SRR5643513	five period of Gastrodia elata	25.210
	SRR5643514	five period of Gastrodia elata	25.470
	SRR5643515	five period of Gastrodia elata	27.910
	SRR5643524	five period of Gastrodia elata	25.070
	SRR5643525	five period of Gastrodia elata	30.000
	SRR5643528	five period of Gastrodia elata	26.840
	SRR5643658	five period of Gastrodia elata	25.420
	SRR5643659	five period of Gastrodia elata	38.160
	SRR5643660	five period of Gastrodia elata	41.070
	SRR5643661	five period of Gastrodia elata	42.070
	SRR5643662	five period of Gastrodia elata	47.280
	SRR5643663	five period of Gastrodia elata	40.980
	SRR5643664	five period of Gastrodia elata	44.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.020
SRP279888	Gastro	Gastrodia elata tuber	47.99
	Juven	Juvenile tuber	32.36
	Mother_Gastro	Mother tuber of Gastrodia elata	27.98
	Mother_Juven	Mother tuber of Juvenile	36.70