Gene detail

Detail information of GWHGAAEX002456/evm.TU.scaffold_12.239

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743771706\|ref\|XP_010916145.1\|	0	PREDICTED: uncharacterized protein LOC105041051 [Elaeis guineensis]
trEMBL	tr\|A0A022QU94\|A0A022QU94_ERYGU	3.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:EYU30090.1}
TAIR	AT1G70750	2.00E-68	Protein of unknown function, DUF593

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	9563060	9576345	-

Transcript Sequence
>GWHTAAEX002456 GTTCAGTCCGCGTCTTCTTTTTTCACTCTCTTTTATCTCCACCTTCTACTAGACAAAGCTTCTCTCTTCGGCTTTCCTTTCTACCTAAGCTCAGCCAACTTTCATTCTTCTTTTCCGAATCAAAATAATTCTTCCGCTCTCTTTTTGCAAACTTTGGCCATTTTCTCCTATCTCCTGATCCCCCTTCCTCTGTCTCCGTTGTAAATAGCTTCTCAAAGTTTCACAATCAAACCCTATATTCCTCTTTTCCTGAAGAATAGAAGGAAAAGAAAGGTGATAACCTCCTCAAACTTCTCAAATTCAATTTCAACTCCATCACTTGCTCAGGAAAGAAGATCGAGGGAAGGATGGCAGTTAATAGGTTTGCCACTGTGCTTCACAGAAATACTCACAGGATGGCGTTCCTTCTAATATACACAGTATTAGAGTGGATCTTAATAACTCTTCTCCTTCTCAACGCCCTATTTTCTTACCTCATCTCCAAGTTTGCTTTCTTCTTCGGTCTAAAGCCCCCTTGCGTCTTCTGCACGAGACTGGATCATATCTTCGAGCCCCGTGGGAAACGGAGCTTTTATAGGGATCTTCTCTGCGATTCTCACGCCGAAGAAATTTCCAAGATTAAGTTTTGCTCAAAACACCGGCGGCTCTCAGAGGCGGGCGACTTGTGCGAAGACTGTGCTTCCTTTGTGCTTGGGGAGACCGATCGGAGCGCTGCTTTGTTTTCATGGATGAAGCGAAGCGAGAAGGAGGAGAAGGATCTTCTCTGCTCCTGCTGCGGTGTGGTCCTCGAGAGCGGCTTTTATTCTTCTTCTGTTATTAAGACTGAACCTTGGGACGTATTGGAGTGTGCTCAGAAGGACAGATCAGCTGAAGAGATGATGGAAGGTGAGAAACATGGCACCTTTGGCTCTGAGAAAGTGGTGCTTTGTAGAGAGATCCCTTCTACTTATTGTGAAGATATTGAAGAGCAAAAGGAAGGAGGAGAGGTAGAGGGTGATTCGAAGGTTGAGCTCTTACTTCCATCATTTTGTGCTGTGGTTGAAGATGTGTCTGCGGAGCTCCTCACTGGACCTTTTGAGAAGATGGCTGTTGAGGAGCGGCTTCTTCCCATAAATTTAATTGATTCTCTTACTTTGATGAGATTTTGCTCTGGGGGGCCTGTAGCTGCTGATATAATGCTTCTAAGTGATTCAGCGGGGATTGCAGAAAAGCAAACTTTTATTGTTTCCAGCGATAATACTGAAGAAAGGAACCCCAATCCAAATATTGGAGTTTCAGCCATTTTGGAACAATCTGAATTTGTCTCGTTTGATCGCTCTAGCATTGTGATTCAGAAATCCATTGATTCTCAGCCTGTGCCTATGAAAACTGTTAATGATCTTGAACAGCAGCAGAGAGCCGCATTGGAAGAAGAACTCAAAGTGAATGAGGAGGCTAATTGTGAGATATCAATAGGGAGTGACATATGTGATCAAGAACAGATTGAGTATCCTCAAATGCACGAATCTTTGCCTGAACCTAAATTCCAGTCATATCAAAACTCGGAAAGCTTCACTGAAACAATTGATAGAGAGACAGTTGAAACTGAACCATTGAAACGAACTGCTCGACTTGCAAGTCACATTGCTATTTCTTCAGTTCTGAATGATATTCTAGAGGAGGGAATGCCTGAAACACCAACAACTCCATACTCTATTGAGGGCCTTCCTGTTTTACCCAAGAGGTTTTTGTTAGAAAGGAGAGAATCTGGGACTGAATCTCTAGATGGAAGCATTGCTAGTGATTTGGAAAATATAGAGTCATTGACTTTAGATCGTTTGAAGGCAGCTCTGAAGGCTGAACGCAAATCTCTGACTGCATTATATGCTGAACTAGAAGAAGAGCGAAGTGCGTCAGCCATTGCTGCTAACCAAACCATGGCAATGATAACCAGGCTTCAAGAAGAGAAAGCTGCAATGCAAATGGAAGCACTGCAGTACCAGAGGATGATGGAGGAACAAACAGAGTATGATCAAGAGGCTCTTCAACTTCTTAATGACCTCATGATGAGGAAAGACAAGGAGAAACAGGAGTTGGAGAAGGAACTTGAGCTGTATCATGAAAAGATTTGTATGTACGAGGCTCGGGAGCGAAGGAAGAAGATCAGGATCAAGGAGAAGGGCAGCAGGAGTAGAAATGATTTAGGCTTTACAAGTTCAGAAGAGAGTGATAATCTTTCCATTGAGTCCCATGAATGTGAAGAGAGTAACCACAGCCATCATGAGAGAAATAAGAACACTCCCTCTGCTGGTGGTTTTAGCTATGTTGAAAATAAAGATCCATTTGATGGATATTTATCTGAATTTGAGGAGAATAGACTTTCCATACTTAAGCAGCTCAAAGAATTGGTAGAGAAGCTTTTCAAAATGGATGATGAAGATGAGAATAGTGATCCAGAAATTGTAGAACATTCCTTTGTTGAAAATGGCCATGGAGTTAATGGACAATGTAAATTGCTAGGTGATCATACAAATTGTAATTCTGCTTATCTTTTTTCACATGATCAGCAAACTAATGGAAATTTTCACCGCAAACAAAGTACAAACATTCTAGGAAAAAGTCTTCTACCACTTTTTGATGCAGTCAGCTTAGAAAGTGAAGAAAATCTATACATAAAGCATGAATCAGTTGATGAGACTTCACCCGGCTCAGTTGCAAAGGTTAAAGTTGGTCGCAAGAACCTGGCTATTACTGAAGAGGTAGATCAGGCCTTTAAGAAACTGCAAGCTCTCGAAGCCGACTGTGACTTTATCAAGCACTGCATATCTTCTCTGAAAAAAGGAGATAAGGGTATGAACCTGCTTCATGATATTCTTCAAAACCTTCATGATCTTAGAAGAGTTGAGCTTCATGCCAGGAATTTGAACTCTGATTTAAACTAGCAGATGGAGTGCATATTGTTTATCAGAATGTTAGCTTGGTGTTATATATGTGGAAAGCTTTGTTAAAACCAGTGCCAACTAAGAATCAGGGAAGAAGATATAGTCTTGGCAACAATGGCGCCTATTACTTGATGTTTCTCTAATCTTTCCGATACTGGGAAGGGTTATTGTGCAAATATCTACTCATTTGCTTAGCTTTGTTCAAAGTTGAAGCAGACTCGAGGGATGAATCTGCTTCTGCTTCTCATATCCCAGAATTTTTGTGGGGCTATGTTAAAGTTCTCGTTTTTTTTCTTGCTTCTTTTTTATTTTATGGCTGTTTTTATTCTTTGGCTTGTTATTATTCCATCCTATGGAGGAAGGTGTGGCTTGGAAGAGAGGTGGAAACATGGCTATTATAGTTTGCCATGGAGCCATGATTTTCTTCTTGTTGGCAGTTGCCTGGTAAGCGGTAACACCAGGCATAAGCCTAATCAATTGAAAAAAAAATAGGGTTAGTGGAGTTCCTTGGTTTGTTTAAATTAGTATAATAGGTTTTTGTGCTTTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX002456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04576.14	Zein-binding	490	580	3.10E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	54.490
SRP064423	SRR2545915	Juvenile tuber	55.370
SRP108465	SRR5643513	five period of Gastrodia elata	31.490
	SRR5643514	five period of Gastrodia elata	33.670
	SRR5643515	five period of Gastrodia elata	38.460
	SRR5643524	five period of Gastrodia elata	29.550
	SRR5643525	five period of Gastrodia elata	72.030
	SRR5643528	five period of Gastrodia elata	56.910
	SRR5643658	five period of Gastrodia elata	78.760
	SRR5643659	five period of Gastrodia elata	44.460
	SRR5643660	five period of Gastrodia elata	48.610
	SRR5643661	five period of Gastrodia elata	46.640
	SRR5643662	five period of Gastrodia elata	53.920
	SRR5643663	five period of Gastrodia elata	44.590
	SRR5643664	five period of Gastrodia elata	48.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.900
SRP279888	Gastro	Gastrodia elata tuber	45.60
	Juven	Juvenile tuber	41.40
	Mother_Gastro	Mother tuber of Gastrodia elata	47.06
	Mother_Juven	Mother tuber of Juvenile	39.89