Gene detail

Detail information of GWHGAAEX002468/evm.TU.scaffold_12.253

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672114079\|ref\|XP_008775291.1\|	8.84E-132	PREDICTED: uncharacterized protein LOC103695684 [Phoenix dactylifera]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	9.00E-42	NAC domain-containing protein 8
trEMBL	tr\|M0T621\|M0T621_MUSAM	1.00E-118	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P11230_001}
trEMBL	tr\|M0T621\|M0T621_MUSAM	6.00E-37	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P11230_001}
TAIR	AT5G16610	1.00E-92	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	9732716	9791923	-

Transcript Sequence
>GWHTAAEX002468 TGGCGCCAGATCTACTTTTTTTTAATAAACTAAATAAGCTAAGCTAACAGTCATCCGGAAACAGACCAGAACAGGCCTGAACCCTAGCCTCATTTTTCAATCCCTTCAGCCTTGTACCCAACATTCATACCGCAATCGACGGCGCCGCCGTTGCCTCCGCCGTCTCCTCCTCCCCTGCCGCCGCCGCTGCCGTTTCCTCCTTCTCTTCCACTACCGCCGCCTCCGCATCGTCGCCTTATCCGCCCTTGGGAATCTCTATGGAGTGGCTAGGTTTGCCTAAAGGCGTTAAATTTGATCCATCCGATGAAGAATTGCTTTGGCATTTGCTTGCAGAAACTGGTAAAGGAGCGGCTAAGCCTCATCCTTTTATCAGCAAGTTTATCATCACCCTTGATAAAGATTTTCGTTTGGACAATATTCATCCTCGATTTCTGCCAGGTGTAAAACAGGATGGCAGCATGTCGTACTTTTTCCATAAAAAACTTGAGATTTCTGGCAATAGGCAGATGAAAAAACAGAAGAAACGTGAGAACTTTGTTGATATTTGCTGGCATAGGATTGGCAAATTGAAGCCAGTGTATGTGGATGGAATTCACCAAGGATCAAAGGAAGTGTTCAGTCTCTATATTAACCCAGTGAGTTGTGGAAATCCTGTGAAAACTTCCTGGTCGATGCACCAGTATTACATTGGCTTGAATGGAGATGAGGAAGGCCTGGCTGTCTCAAAATTTTTTTTTAAAAGGTCTAAACAGGACTTTCATGATTTACTATCAGATTCTGAGGAGGGGTTTGTTGCAGAAGTTATTGATGTAGCCGCTCCTTTGCAAGTGGCGCCTGAATTTCATCAGGCGAGATTACTTGTTGATCCTTCTAAAGATGCATCCGCTCAGATAGCTGATTGCAGCTTGGGAAGGGAAACAGATGATGTACACACAAGTAGCTCTCAAAATGCTGTAAAGTATCTTCAGAAGGCAAGAATCAATCTTCATCAGCAATCCGAAGGAATTGTAACTACTGATGAGCTCCCATTGTTGGAATCATTTTGTGAGGCAGCTGCAGAAATCAGCGTTTGCAGCATAAGCGCAAATTCTGAAATCACAGTTAAGGATCAAAAAGAGAGACTGGATAACAGAACTGATAGTTTTCTGGGTAATTTAAGGGATTCTGGAAACACCTCAAGTGACTCCATTTATGACAAAGTAAAAGATGAAGATACATTTGATTCTAATGTTGCTCATATCTCAAAAGAAAACTCATGTTCACAGAGATCTTCCAAAAATACTTTGGGAAGATTTGTTGTTTCGAAACTTGGCAAAATCGACACAACAGGCGTCTGCTCATTTGCAAGGAAAAAACATGATGTAAATTCCAAATGCTTAGATGATGCACATGTTTTACTGCATAGAACTTCAAATGCAGAGCATGGCAATGCACATCAGAATTTTGTTATTCTAGGTTTACCAGCCTACAATATAAAGAGCAAGCCATCAGAAGAAAGTGAATCCAACAGTGGTTTTGGAAGAAATTCCAGTTATGGTGTGAACATTTCAGCACAATCAGCTTTACCTATCAAGATAGAGCCTAAATATTTTGAAGACAGTAAAGTTCGTATTGCTCCTGGAAAAATTTCTGATAAAAACTTAGATGCTTCTGCACCATCAGAATCTTCTTTTAATGTCAAAGATGAACCTTTTGAAGAAACTAAACCAAGCATTATTGTTGAAACGTGCGTTGAGTTTCCAAACTACTCTCAATCAAGTCACCCTCTTAACTTCTCTAGTACTTCTAATTCTTGCCTTTCTACATCCAGCATTCAGGGAAAAAATATTCCATATTCCAATATTTTGAGGGAAGGTGCCCCAAGTTGCTATTCAATTCATCAAACAAGTACTCGTGAAGGCTTGGAGTTTCCACGTGCTGAAAGTCTTAGTACTACTGCATCTGATATTGATGAACTGCCTTTAAAACCTCCTGACTTGATCAATCAGCTTCCTGACAAGGATGACAGTGATTATGATGGCATGAGCATTGACAATTCACGAGCTATTGGGAATAGTGAATATTTCGGTCAGTCTACATATCCACAAATTACTGTTCAAACTGGAAAGCTGGAATTGAATTTAGTTATATCTAGCAGTTCCCCAAATGTAAAATCTGAGCCTGTGGAGAGCAGCCTTCAGACTTGTTCAACTCCTTCCTGCAACTTCAGAGGACATGCCCCACTGATGTTTGAGAATACAACTGAGTTTCCAAATGACTTCCAATTGGACATATTAGATCATGTTCCATTGAAATATAGGATGGGTATCCCAGCTTCTGAAAGTGTTGTTAATGCCAAAAGTGGAACCGTCCCAGGGGAACTTGCTTCAGCAACTCCAGGCTGTCGATCAGTAGATACTAAAGAACGTATTTCTACCAGTAGAAAAAGAAGAAAAAGGACTGCAACGGATTCTGTGGAAAAGGCTATGGACGAAGATGCTCCAGGACTCCTGCAGTTCCTACTTGATAGAGGCATACAAGTTGAAGAAATTAAACTTTATGGAAATCTGGAGGATAATGATTTACTAGAAATGTCTTCTTCCCAGGAATGTTTTGAAGACCTAGAAACTGTGATGACCAAGTTATTTTCTGAGCGTTCATCTCTTTTGAGATTTACAATGGGACGAAGTGAGAAGGGATCCAAAACCGTCTATTGCTTGACTTGTTTGATTTCTCTTATTGAACAGGCTCGGTATATGCGGTTTCGCGAGAAGGCGATTGAATGGGGATGGTGCAGGGAGCTTCAGTCCTTCATCTTCGTGTTTCAGGCGCACAACAGAATAGTTTTGGAGCGTCCTGAGTACGGCTACGCCACCTATTTCTTCGAGCTGCTGCCTCTCCCCATTGACTGGCAGATCAAGCGGCTGGTCATGGCCTTGAAGCTCCCCATCTGCGCCCGCTCCATTCTTCTCGAGAACAAACCTTTAATTGTGGGGGAAGATTTGTCGGAAGGGGAGGCGTGCGTTCTGGAAGCCTACGGCTGGAATCGCAACACCGGATTTGGAACGCTGTTGAACTACTGCGACAGAGTGATGCACGACAGGAGGACTTTGATGCACAGTTCGGAATGGAGGGCTAAGATTGGACGGCTTCTGATGAATGGCTATGATGGCGGTCGCGTGGTGATGCCTGCTGTCCCCGAAAAGGTTTCCAAATACTTTGGAGAAGCCAAGATGGAGCCATTTGCTTCACCAGAAGAATATGATACTGTACCCCTAAAAGCGGCAAAGTGAGGTATCAAATAATAGCATTCTATTTTAATAATTGATAAAACTGACTCATTTTGAAGTGTATTTATTGTGTTAAAATAGATGAGAAACATGAATGAATCTAATTAGATCCAAGGCTTTCAATAATCTCTTAAATAGCTCGTAAAAATACAAAATATTTTGCTGTATCACAAAGATACATAACTAAATTAACTTTTATGTGTGTTTTTGAGAGTTATTTGAGTGCCAAATTACCTTAGTATCATAATGACTATGTAAATAGAGGCTGAATGAGGTGGCAAAGTCATGTGTAATATGGATAAGTTACTTATTCTTGTGTGAATTTGAGTATATATAAGCGAACTCGCTCTACTTTGTAAATGATCAATAATATTTTTGAGTTTTGCTGCACGCACAGTGCACAGTGCAGTGCGTGTGGAATGATTTTTGTTTGACAGTAGCATTTTGACAGCTACACATCAGAAAATACCTCTTCGCATAAAAAATGTTTGACTGGTGCACTTGCACCTGCTTTGCTCGTGACACCTAAATTTTATTCTATATTAAAATTAATTAAAATTAGAACATGGAGCTTGCTGATAAAACCTGGTAGTTTAATAAATAAATAAAAATCAGTGCGTGCTTTGAAAGTTCAGACGTCTGAATATTTTTATTTCAATAAAATAAAAGGGTAGAATTGTAATTTGGTTTTTATCTTTTTCATAAATGAGACGATTTGAATTATTTATCAGAATCTTTCGGCCGC

Network for GWHGAAEX002468

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.14	NAM	7	143	9.50E-16

Protein Sequence

>GWHPAAEX002468
MEWLGLPKGVKFDPSDEELLWHLLAETGKGAAKPHPFISKFIITLDKDFRLDNIHPRFLPGVKQDGSMSYFFHKKLEISGNRQMKKQKKRENFVDICWHRIGKLKPVYVDGIHQGSKEVFSLYINPVSCGNPVKTSWSMHQYYIGLNGDEEGLAVSKFFFKRSKQDFHDLLSDSEEGFVAEVIDVAAPLQVAPEFHQARLLVDPSKDASAQIADCSLGRETDDVHTSSSQNAVKYLQKARINLHQQSEGIVTTDELPLLESFCEAAAEISVCSISANSEITVKDQKERLDNRTDSFLGNLRDSGNTSSDSIYDKVKDEDTFDSNVAHISKENSCSQRSSKNTLGRFVVSKLGKIDTTGVCSFARKKHDVNSKCLDDAHVLLHRTSNAEHGNAHQNFVILGLPAYNIKSKPSEESESNSGFGRNSSYGVNISAQSALPIKIEPKYFEDSKVRIAPGKISDKNLDASAPSESSFNVKDEPFEETKPSIIVETCVEFPNYSQSSHPLNFSSTSNSCLSTSSIQGKNIPYSNILREGAPSCYSIHQTSTREGLEFPRAESLSTTASDIDELPLKPPDLINQLPDKDDSDYDGMSIDNSRAIGNSEYFGQSTYPQITVQTGKLELNLVISSSSPNVKSEPVESSLQTCSTPSCNFRGHAPLMFENTTEFPNDFQLDILDHVPLKYRMGIPASESVVNAKSGTVPGELASATPGCRSVDTKERISTSRKRRKRTATDSVEKAMDEDAPGLLQFLLDRGIQVEEIKLYGNLEDNDLLEMSSSQECFEDLETVMTKLFSERSSLLRFTMGRSEKGSKTVYCLTCLISLIEQARYMRFREKAIEWGWCRELQSFIFVFQAHNRIVLERPEYGYATYFFELLPLPIDWQIKRLVMALKLPICARSILLENKPLIVGEDLSEGEACVLEAYGWNRNTGFGTLLNYCDRVMHDRRTLMHSSEWRAKIGRLLMNGYDGGRVVMPAVPEKVSKYFGEAKMEPFASPEEYDTVPLKAAK

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.560
SRP064423	SRR2545915	Juvenile tuber	8.320
SRP108465	SRR5643513	five period of Gastrodia elata	5.320
	SRR5643514	five period of Gastrodia elata	5.730
	SRR5643515	five period of Gastrodia elata	5.680
	SRR5643524	five period of Gastrodia elata	4.690
	SRR5643525	five period of Gastrodia elata	6.570
	SRR5643528	five period of Gastrodia elata	5.360
	SRR5643658	five period of Gastrodia elata	7.780
	SRR5643659	five period of Gastrodia elata	7.180
	SRR5643660	five period of Gastrodia elata	6.590
	SRR5643661	five period of Gastrodia elata	6.210
	SRR5643662	five period of Gastrodia elata	5.000
	SRR5643663	five period of Gastrodia elata	6.490
	SRR5643664	five period of Gastrodia elata	6.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.870
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.910
SRP279888	Gastro	Gastrodia elata tuber	11.55
	Juven	Juvenile tuber	5.75
	Mother_Gastro	Mother tuber of Gastrodia elata	6.94
	Mother_Juven	Mother tuber of Juvenile	5.39