Gene detail

Detail information of GWHGAAEX002473/evm.TU.scaffold_12.258

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|110635841\|ref\|YP_676049.1\|	2.00E-41	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Chelativorans sp. BNC1]
KOG	KOG2495	0	NADH-dehydrogenase (ubiquinone)
nr	gi\|672139702\|ref\|XP_008793641.1\|	0	PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Phoenix dactylifera]
Swissprot	tr\|Q94BV7\|NDB2_ARATH	0	External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial (Precursor)
trEMBL	tr\|I1I0V5\|I1I0V5_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI3G14800.1}
TAIR	AT4G05020	0	NAD(P)H dehydrogenase B2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	9879078	9981507	+

Transcript Sequence
>GWHTAAEX002473 ACTGATTATTTACTCAGATTAGCTCATGCAAAATAATGCAAACATTTGGGCAGCTTTCTTAAAAAAAGAAAAATAGAGGCTTACACAAGGAATATATACCAAAAAAAAATGCTACGCTTTGGGTTTATTAGAGTTATTCGCTGATTCTGTTTGTCCATTGTTTATGTATCATCCGCAGATCTGACATCAGAGTTGCAGTAGCAGTGATGCGGTTCACCTCTTTCCTAACCGGTGATGCGTCCTGGGCCTTTAACGTTCGACCTATCCTTTCCAAGCTCGTCATCATCATAGCTGGAGCTAGCTGTGGAAGCCTTGTCGCTTATGCTGATACACGATCAGATTTGAATGTGACAGCATCTCAGGGATTTACAAAGAAGAAGGTAGTAGTTCTTGGTACTGGTTGGGCTGGCACAAGCTTTCTAAGGAGTTTGGACAACTCGCTTTATGATGTACAGGTCATATCACCTCGTAATTATTTTGCATTCACCCCGTTGCTACCAAGTGTTACTTGTGGAACAGTGGAAGCACGCAGTATTGTTGAACCCATTCGCAATATCATAAGAAAGAAAGGGGGTGATATTAAATTCTGGGAAGCTGAGTGTTTCGAAATTGATCCAGCAAACAAGAAAGTTCATTGTCGGTATACTACTACGAATTCTTCCTTGACGGATGAATTTTTGGTTGACTACGATTACCTTGTAATAACAATAGGTGCCAGGGCTAACACATTTAACATTCCTGGTGTTGAGGAAAACTGCCATTTTCTAAAGGAAGTAGAGGATGCACAGAAAATTCGTAGGAGTGTTATGGACTGTTTTGAAAGAGCCAGCCTACCAAACCTAGATGATGATGAGAAGAAGAAGAATCTTCATTTTGTTATTGTCGGTGGTGGTCCAACTGGTGTCGAATTTGCTGCTGAGTTGCATGATTTTATTTCAGAAGATTTAGCCAAGTTATACCCTTCTGTTTGTGGTCTCGTGAAAATAGAGGTCATTGTGGCTGGCGAGCATATTCTGACAACGTTTGACAAAAGGATTAGTAGGTTTGCTGAAGAGAAGTTCCAGAGGGATGGTATTGAACTTACAACAGGATACAGGGTCGTGAAGGTCTCTGACAAGAACATTACAATGACATCTAAGACAGCTGGAGAGTTTTCAAAACCATATGGCATGGCTATATGGTCTACCGGTATAGGCACCCGCCCTGTTATCGTGGACTTGATGAAGAAAATTAAACAGGGTAATAGGCGTGTTTTGGCCACAGATGAGTGGCTAAGAGTTTCTGGATGCGATAATGTGTATGCACTTGGCGATTGTGCATCAATCAATCAAAGGAAAATTATGGAAGATATTGCAAAGATATTCAGGATAGCAGATAAAGATAATTCTGGAAAGTTAACAGTGAAAGAAATTCAGGATATTTTGGAAGATATTTGCATAAGATATCCTCAGTTGGAACTTTATATGAAGAGCAAGCACATGGGCAGCATTCTTGAACTATTAACGGATTCTAAAGGTGATGTCAAAAAAGAGGCCGTAGAAGTGGACATAGAAGAGTTCAAGAAAGCTCTTGCTAATGTCGATTTACAAGTCAAGACTCTTCCTGCTACAGCACAGGTTGCTGCCCAGCAAGGGAACTACCTTGCCAGATGTTTTAATAAAATGAAGCATACTGAACGACATCCAGAAGGTCCTGTGCAGTTTAGCGAAAGCGGTCGGCACCAATTCCTGCCTTTTAGGTACAAGCACTTGGGGCAGTTTGCTCCATTAGGGGGTGAACAAACAGCTGCACAGTTGCCAGGCGATTGGATCTCAATCGGCCATAGCTCGCAGTGGCTGTGGTACTCTGTCTACGCAAGCAAACAAGTGAGCTGGCGGACAAGGCTGCTTGTTATCTCAGATTGGACAAGGCGGTTCATTTTTGGAAGGGACTCTAGTTGCATATAATCAATCAGTAATCGTCTCGACAAATAAAACTAAGGTCCGAAATCTCCTAAATCTGATTCCTGTGCTGATCTCGTTTCATGATGACCTACAGTATTCTCTACTTGAAATGTTACTTTGCCCACTGCTGCAATGTGCTGCTGCTGTTAATGTTTCAGTTTTATTTTTCCTTCATTATTCTTACCTATGTTGAATCTGCTAGTCTGGCTTTTAAATAACAGAATAAATGACAAAATTGGTGTTTGTGTACGCGTTGCGTCTGTTGTTTTGCTATAAGAAAAGAACTTTCTTATTTCTTTGGGGGGAGATTGTATTACGACCAACAATGAAGCAATTTTTAATGACCCAACTTATGCAATTTTAATAAACGCTGTGGCACTTGTACGGTTAGACTTAGTTTATGTATATGTATTGATAGCCCTATAAAAACGTTGTGGCACTTTTCGATATTTTTCAATCAGTCTTCAACTTCCATTAGTGAGATTATCCCATTAAAGGTGGGGTGGCTTTAGTTTAAGATAAGCTTGAAAATTTTCATTAGTTGAGAAATTTTGATTTGAGGTAGGTTGTATTGAGGATGTGGATGTATGATTGGTGGCTTGAATATGAAGTAGGGTTGTATCATCTCAATAATTTATTGGTTCTATTCTCAATGGGTTCATTTGAATTGGGTGTGATAATAGGAGTTTCTTGTACAAAAAGAAAGATTTATATA

Network for GWHGAAEX002473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.13	Pyr_redox_2	57	379	1.40E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.480
SRP064423	SRR2545915	Juvenile tuber	41.670
SRP108465	SRR5643513	five period of Gastrodia elata	18.480
	SRR5643514	five period of Gastrodia elata	16.330
	SRR5643515	five period of Gastrodia elata	16.780
	SRR5643524	five period of Gastrodia elata	17.090
	SRR5643525	five period of Gastrodia elata	6.330
	SRR5643528	five period of Gastrodia elata	4.720
	SRR5643658	five period of Gastrodia elata	5.980
	SRR5643659	five period of Gastrodia elata	4.850
	SRR5643660	five period of Gastrodia elata	6.350
	SRR5643661	five period of Gastrodia elata	5.430
	SRR5643662	five period of Gastrodia elata	3.500
	SRR5643663	five period of Gastrodia elata	3.900
	SRR5643664	five period of Gastrodia elata	3.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.660
SRP279888	Gastro	Gastrodia elata tuber	18.33
	Juven	Juvenile tuber	8.35
	Mother_Gastro	Mother tuber of Gastrodia elata	9.86
	Mother_Juven	Mother tuber of Juvenile	7.81