Detail information of GWHGAAEX002481/evm.TU.scaffold_12.266


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17562.00E-42Histone 2A
nrgi|747071301|ref|XP_011082513.1|1.95E-42PREDICTED: histone H2AX-like [Sesamum indicum]
Swissprottr|Q6ZL43|H2A1_ORYSJ5.00E-43Probable histone H2A.1
trEMBLtr|G5DWE7|G5DWE7_SILLA1.00E-41Histone H2A {ECO:0000256|RuleBase:RU003556} (Fragment)
TAIRAT4G272302.00E-42histone H2A 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000091010403710105378-
Transcript Sequence

Network for GWHGAAEX002481

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone19952.30E-11
PF16211.4Histone_H2A_C981220.00027
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.890
SRR2545915Juvenile tuber2.240
SRP108465SRR5643513five period of Gastrodia elata13.700
SRR5643514five period of Gastrodia elata13.580
SRR5643515five period of Gastrodia elata21.750
SRR5643524five period of Gastrodia elata19.230
SRR5643525five period of Gastrodia elata46.640
SRR5643528five period of Gastrodia elata33.990
SRR5643658five period of Gastrodia elata59.460
SRR5643659five period of Gastrodia elata14.070
SRR5643660five period of Gastrodia elata20.400
SRR5643661five period of Gastrodia elata17.560
SRR5643662five period of Gastrodia elata21.400
SRR5643663five period of Gastrodia elata29.130
SRR5643664five period of Gastrodia elata54.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.910
SRR6049655Rhizomagastrodiae_C368-T10_good_14.930
SRR6049656Rhizomagastrodiae_C368-T07_good_14.160
SRR6049657Rhizomagastrodiae_C368-T07_good_14.020
SRR6049658Rhizomagastrodiae_C368-T04_good_14.820
SRR6049659Rhizomagastrodiae_C368-T04_good_14.520
SRR6049660Rhizomagastrodiae_C368-T01_good_12.660
SRR6049661Rhizomagastrodiae_C368-T04_good_12.430
SRR6049662Rhizomagastrodiae_C368-T01_good_12.700
SRR6049663Rhizomagastrodiae_C368-T01_good_13.200
SRR6049664Rhizomagastrodiae_C368-T10_good_15.370
SRR6049665Rhizomagastrodiae_C368-T10_good_15.370
SRP279888GastroGastrodia elata tuber 31.35
JuvenJuvenile tuber1.58
Mother_GastroMother tuber of Gastrodia elata 44.92
Mother_JuvenMother tuber of Juvenile 15.63