Detail information of GWHGAAEX002483/evm.TU.scaffold_12.268
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|254786725|ref|YP_003074154.1| | 1.00E-14 | thioredoxin [Teredinibacter turnerae T7901] |
| KOG | KOG0907 | 1.00E-40 | Thioredoxin |
| nr | gi|743820686|ref|XP_010931846.1| | 1.10E-49 | PREDICTED: thioredoxin-like protein CXXS1 [Elaeis guineensis] |
| Swissprot | tr|Q0J9V5|CXXS1_ORYSJ | 1.00E-42 | Thioredoxin-like protein CXXS1 |
| trEMBL | tr|M0U4S1|M0U4S1_MUSAM | 2.00E-48 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P30140_001} |
| TAIR | AT1G11530 | 1.00E-40 | C-terminal cysteine residue is changed to a serine 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 10126920 | 10129763 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002483
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module11 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 17 | 113 | 2.40E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03671 | trxA | NOD-like receptor signaling pathway | map04621 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006662 | Biological Process | glycerol ether metabolic process |
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0015035 | Molecular Function | protein disulfide oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 319.530 |
| SRR2545915 | Juvenile tuber | 345.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 173.200 |
| SRR5643514 | five period of Gastrodia elata | 137.560 | |
| SRR5643515 | five period of Gastrodia elata | 152.110 | |
| SRR5643524 | five period of Gastrodia elata | 128.050 | |
| SRR5643525 | five period of Gastrodia elata | 476.520 | |
| SRR5643528 | five period of Gastrodia elata | 255.190 | |
| SRR5643658 | five period of Gastrodia elata | 438.510 | |
| SRR5643659 | five period of Gastrodia elata | 329.910 | |
| SRR5643660 | five period of Gastrodia elata | 386.840 | |
| SRR5643661 | five period of Gastrodia elata | 334.830 | |
| SRR5643662 | five period of Gastrodia elata | 363.690 | |
| SRR5643663 | five period of Gastrodia elata | 375.640 | |
| SRR5643664 | five period of Gastrodia elata | 406.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 201.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 111.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 155.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 223.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 232.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 256.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 170.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 227.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 79.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 112.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 118.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 118.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 770.03 |
| Juven | Juvenile tuber | 348.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 246.77 | |
| Mother_Juven | Mother tuber of Juvenile | 314.25 |