Gene detail

Detail information of GWHGAAEX002486/evm.TU.scaffold_12.272

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2955	Uncharacterized conserved protein
nr	gi\|695035054\|ref\|XP_009404997.1\|	PREDICTED: uncharacterized protein LOC103988174 isoform X1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M5X9M7\|M5X9M7_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15760.1}
TAIR	AT3G20720	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	10229770	10278421	+

Transcript Sequence
>GWHTAAEX002486 GAGTTCTCTAACCCGAACTTGCCGACAGAAGTTAGGAATGGAAATGCGGACGCTTCAGACCGTCTGTGAAGGAAGAACAAGGGCCGAGAGTTCTTCCCGTAACAACGCAGAGAAAATAGCAATAAAAGAAACATATTCTGCTTTTATTTTCTAATTACCCGCCTTCCTTTTTACCTCTCCATCTCAATTTTGCCGTGATTCTGCTTCGACATTGGAAACTTCGGCGATCACAGATCTACAATTGTTTAAATTCGCTTAGGCGCCATCGATTCCTGAGATGGAATCGATAATTGCCCGAGCTCTCGAGTACACGCTGAAGTACTGGCTTAAATCTTTCTCCAGAGATCAGTTCAAGCTTCAGGGCCGCACTGCTCAGCTTTCCAACCTAGACATCAACGGAGACGTGCTTCATGCCAGCTTCGGGCTGCCGCTGGCACTGAATGTCACCACTGCAAGAGTTGGGAAGTTAGAGATCACGCTTCCTGCTGTTTCTCATATACAAACGGATCCGATTGTTGTTCAAATTGATCGGCTTGATCTTGTTCTTGAGGAGAAATCTGATGAAGGCAATGAGTCAAGCTCTAGCAGTGTCCAGCCATCAGCAAGCTCTTCAAAGGGAAACGGATATGGATTTGCAGACAAGATTGCAGATGGAATGACTTTGGAAGTACACACAGTTAATCTTATGCTTGAAACCCGTGGTGCTGCTCGACCCCAAGGAGGTTCAACTTGGTCATCCCCATTGGCAGCCATCACAATTCGCAACCTTTGGTTATATACAACGAATGAAAATTGGGAGGTTGTCAGCCTGAAGGAAGCAAGGGACTTCTCCAATAATAAAAATTTGATTTATGTGTTCAAGAAGTTAGAATGGGATTCACTATCAATTGATCTCTTACCTCATCCTGATATGCTAACGGATTCACACTTATCATCTATCAATGGAAAGAATGGAAGGGATAATGATGGTGCAAAAAGAGTGTTCTTTGGGGGTGAAAGGTTTTTGGAAGGAATCTCTGGACTGGCTCATATTACAATACAAAGGACTGAACATAATCGTCCATTGGGTCTAGAGGTTCAGTTGCATGTCACTGAAGCTGTATCTCCTGCTCTTAGTGAACCAGGCTTACGGGCTTTTCTTCGGTTCATGACGGGATTATATGCTTGTTTGAATAGGGGGGATGTTGATCCAAAGACTCAGCAGCAATGTACTGAGGCTGCCAGTCGTTCATTGGTTTCAATTATTGTAGATCATATCTTTCTATGCATTAAAGATGCTGATTTCCAACTTGAACTTCTGATGCAGTCGCTTTTTTTCTCTAGGGCTAGTGTATCTGACGGAAAAATAACAAAAAATCTGACTCGTATTATGGTTGGTGGACTATTTCTGAGGGATACCTTTGCAAACCCTCCGTGTACATTAGTTCAACCATCAGTGGATGCTGTTACAGAGGAACCTCTGCTTATTCCAGAGTTTGGAAAGAACTTTTCTCCACCAATTTATCCTTTTGAAGATACGCAGCTAAAGTTCAATATTGACTTGCCTTTGATTAATCTCTATTCTCTTCAGATCACTCCATCGCCTTCCCCCCCAACTTTTGCTTCACAGACTGTCATTGATTGTCAGCCTCTTTCGATTATTCTTCAGGAAGATTCATGTTTGAGGATCTTCTCTTTCTTAGCTGATGGGGTTGTTGCAAATCCTGCAACTGTCTTGCCTGATTTCTCAATCAGTTCCTTGCAGTTCAGTCTGAAAGAGCTGGATCTAACTATTCCGTTGGATTTTCAAAAGCCTGCTGATATTTATTCAACTAGAGAACTTCATTCTCCTGCCAGTTTTTCTGCTGCAAAGCTTCATGTAACTGATTTATATTTCTTGCAATCACCATCAATAAGATGCAATTTACTAAATCTGGATAAAGATCCTGCTTGCTTTAGTATGTGGGAGCACCAACCGATTGATGCGAGCCAAAAGAAGTGGACAACTAAAGCTTCTCATCTTAGTCTTTCTCTCGAAACTTGCAATGGTTTGCCAACAGAGCACATATGCTCTGCCAATTTGCCTACTGAACTTTGGAAGTGTGCTGAGGTGCATGAAGCCTGGTTTGAGGCAGCTATGGTCACTTCAGATGGCAGGCCTTTGGTTGAAGTTCCCCCTCCAGGAGGTGTTGTCAGATTAGGAGTTTCCTGTCAAGGATATTCTTCCAAAGCTTCTGTTGAACAGCTACTTTTTGTTTTAGATATCCATGCTTACTTTGGTAAAGTTAGTGAGGAGATCAAAAAAGTTGGTAAAAATGACAATAGCAGCAAAGGACTTTTGGGCAAAAATTTTATTGAAAAGCTTCCTAGTGACACTGTAGTTAGTTTAGCTGTAAATAGCCTTCGTCTTATGTTTCTTGAGTCTTTCTCATTGCATGTTCAAGGATTGCCATTAGTTGAGTTCAATGGTGAAGATTTCTTCATGAAAGTTTCTCACCAGATTTTGGGAGGTGCTTTTGCTGTATCCACCAGCTTGGTCTGGGAGACTGTGTGCATCAACTGTGTAGATGACCAAGTATTACCTAACAAGAAGTGGATAGGCACTGTTTATGAGTATGACATGCTGGGAGGAGTGGGAAATGGTTATCATAAAATGAAACCTGTTTTTTGGATTGATAGACAGAGTAGAAATCAAGCCCATATAGTCCCATTTCTTGATTTGTGTATTCTGCATGTCATGCCTAATAAAATGCTAGATATGGAATGTCATAGCCTGAATGTTTTTGCAAAAGTTTCTGGTGTTCGACTTGGTGGTGGAATGAATTATACTGAGGCTCTTCTACATCGATTTGGTGTTCTCGGACCAGATGGTAGCCCTGGTGATAGCCTTATAAAAGGACTGGAAAATTTATCTTCCGGGCCTCTTGCGAAGCTCTTTAGGCCAGCATCTTTAGCAGATACTGGCAAGGAAAATATTAGTAGCTTTCATGAGGATCAGGTGATGCTTTTGGAGCTTGGAATGCCGGATGACATTGATGTATCCATAGAATTGAAAAATTGGTTGTTTGCTCTCGAAGGAACAGAGGAGATGAGAGAAGACTTGTGGCATTGCAATGGGGAGAAATTCAGCAGAGAGCAAAGATGTTGGCACACGTCATTCCAAAATCTTCATATGAAAGCAAAAAGTGCTCAGAAAACAAATTCACATGAAAATGGAATGTTGCAGAAGGACAGGGACCATCCTTTGGAATTGATAGTGATTGGCATTGAAGGTTTGAAGGCTTTGAAGCCACTGTCTAACTATAATCACTCCACTACTCTTGTTGGAATCAAAGCAGACAGTCATTCAAGGAACATAGAACCCGGCGGTGTTAATGTAGAAGTTCGCTATTTTCTTTCAGATTCCGAGAATGTCGAGAAAGCCAAATGGGCTGTAGAGAATATAAGATTCTCAGTGAAACAACCGATTGAGGCGATTGTCTCAAAGGAGGAGCTCGAGTACCTTTTTGTGCTTTGGCGGTCAGAAGTGGACTCGATGGGAAGAATCACTGCTGGAATTTTGCGGGTTTTAAAGCTTGAGGAATCAATTGGTCTCGCTACTATTGATCAACTCAGCAATCTTGGAAGTGAAAGCCTAGACAAAATCTTTACTCCAGAGAGAATCAGCAGGCGCAGCAGCATCAGCAGCATCAATTTCACCCCTAAATCAAATGCTGTTGGCACGCCTAATGACGCAAATGCTACAATTTTGTTACTCGAATCGGAGGTTCGAGAGTCACAGGAGAAGTGCTCTGCCCTTTTTTCAGCACTGAGCAGCTCCGCCAACACTTCGGAACCTACTGCGGATATCAGGCAGATTGAGCAGAAGTTGGAGAATATGCAAACTTTGTTGGCAAGAATCAGAACTCTGCTCTAAGCTGCAATACTGAAGCTACTTTTTGTTTGTTGTGGTTATTATTATTATTATTCTTTCGCTGTGCATATTCGTTAGCATCATGCTACCAAACTGCAGGCTGAAATAATAAAATTTTGATAGAAGTTATATGGTTAGGGGTTTTTCATACTAGAAGTTCTTACTTTTTTGTTGTAACAGATTTGATTTTATAAATAAAGAATCATGTGATTTTTATTGCAA

Network for GWHGAAEX002486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12624.6	Chorein_N	2	103	2.20E-12

Protein Sequence

>GWHPAAEX002486
MESIIARALEYTLKYWLKSFSRDQFKLQGRTAQLSNLDINGDVLHASFGLPLALNVTTARVGKLEITLPAVSHIQTDPIVVQIDRLDLVLEEKSDEGNESSSSSVQPSASSSKGNGYGFADKIADGMTLEVHTVNLMLETRGAARPQGGSTWSSPLAAITIRNLWLYTTNENWEVVSLKEARDFSNNKNLIYVFKKLEWDSLSIDLLPHPDMLTDSHLSSINGKNGRDNDGAKRVFFGGERFLEGISGLAHITIQRTEHNRPLGLEVQLHVTEAVSPALSEPGLRAFLRFMTGLYACLNRGDVDPKTQQQCTEAASRSLVSIIVDHIFLCIKDADFQLELLMQSLFFSRASVSDGKITKNLTRIMVGGLFLRDTFANPPCTLVQPSVDAVTEEPLLIPEFGKNFSPPIYPFEDTQLKFNIDLPLINLYSLQITPSPSPPTFASQTVIDCQPLSIILQEDSCLRIFSFLADGVVANPATVLPDFSISSLQFSLKELDLTIPLDFQKPADIYSTRELHSPASFSAAKLHVTDLYFLQSPSIRCNLLNLDKDPACFSMWEHQPIDASQKKWTTKASHLSLSLETCNGLPTEHICSANLPTELWKCAEVHEAWFEAAMVTSDGRPLVEVPPPGGVVRLGVSCQGYSSKASVEQLLFVLDIHAYFGKVSEEIKKVGKNDNSSKGLLGKNFIEKLPSDTVVSLAVNSLRLMFLESFSLHVQGLPLVEFNGEDFFMKVSHQILGGAFAVSTSLVWETVCINCVDDQVLPNKKWIGTVYEYDMLGGVGNGYHKMKPVFWIDRQSRNQAHIVPFLDLCILHVMPNKMLDMECHSLNVFAKVSGVRLGGGMNYTEALLHRFGVLGPDGSPGDSLIKGLENLSSGPLAKLFRPASLADTGKENISSFHEDQVMLLELGMPDDIDVSIELKNWLFALEGTEEMREDLWHCNGEKFSREQRCWHTSFQNLHMKAKSAQKTNSHENGMLQKDRDHPLELIVIGIEGLKALKPLSNYNHSTTLVGIKADSHSRNIEPGGVNVEVRYFLSDSENVEKAKWAVENIRFSVKQPIEAIVSKEELEYLFVLWRSEVDSMGRITAGILRVLKLEESIGLATIDQLSNLGSESLDKIFTPERISRRSSISSINFTPKSNAVGTPNDANATILLLESEVRESQEKCSALFSALSSSANTSEPTADIRQIEQKLENMQTLLARIRTLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.090
SRP064423	SRR2545915	Juvenile tuber	29.490
SRP108465	SRR5643513	five period of Gastrodia elata	18.870
	SRR5643514	five period of Gastrodia elata	19.390
	SRR5643515	five period of Gastrodia elata	22.910
	SRR5643524	five period of Gastrodia elata	21.010
	SRR5643525	five period of Gastrodia elata	19.680
	SRR5643528	five period of Gastrodia elata	22.580
	SRR5643658	five period of Gastrodia elata	19.570
	SRR5643659	five period of Gastrodia elata	29.560
	SRR5643660	five period of Gastrodia elata	34.260
	SRR5643661	five period of Gastrodia elata	28.070
	SRR5643662	five period of Gastrodia elata	29.570
	SRR5643663	five period of Gastrodia elata	37.430
	SRR5643664	five period of Gastrodia elata	31.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.950
SRP279888	Gastro	Gastrodia elata tuber	34.25
	Juven	Juvenile tuber	24.88
	Mother_Gastro	Mother tuber of Gastrodia elata	23.56
	Mother_Juven	Mother tuber of Juvenile	29.42