Gene detail

Detail information of GWHGAAEX002487/evm.TU.scaffold_12.274

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743884321\|ref\|XP_010909653.1\|	2.22E-155	PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6H7U2\|C3H13_ORYSJ	9.00E-88	Zinc finger CCCH domain-containing protein 13
trEMBL	tr\|M0S375\|M0S375_MUSAM	4.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P26180_001}
TAIR	AT3G21810	1.00E-28	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	10282970	10308105	-

Transcript Sequence
>GWHTAAEX002487 CTTCGGTGCGCATTTTTTTCAGGGTTTCGATTTGAACAGTTTATATAATCGGCGCACCTGCCGCATCATCTTCAATATTCCTACTCTATATCTAGGGTTTTTGAAGCCCATATTCTCTTTACCAGGCCCTTGTTTTCTTCTTGATCATCCAGATCTTCTACGTTCGGAGCCGTTAAAAGCTGCTATTCCGGTTCACGATGCTGGGAAGGAGGATGTACAAGACGAAGCTATGTATGCTGTACCAGAGAGGCCGTTGTCCTCGTCAGAGTTGCTCATTTGCACACGGAGAAGTCGAACTTCGCCGTTTCGGCGGATCGTTCAATGGCAGACGGGATTATAGAACTAGTGACCTGAGGGATAAGCTTGATAGAAGGCAATCTCCAACCCGAAGATATTCCCCAGGGAGAGATGGGAGAGGTTATCATACTTTTCGTAGTCACAGACCTGTTTCCCATGACAGGGACAGTAGCCTTTCAAGATCACCAATTAGGAGAAGTGAAAAAAGGCCTAAGAAAAAGCATTCTGTGGATGGTGAAAGTGATATTTCTGGAAGTCATAAGTTATCTGATGGTACTGAAGATATTAGAAAAGAAAATAACGTTTCTTTTGACAAAAGGAGTATACAGGAGGAGCAGCTAAGACAGGTAAAGTTGGACATTGAAAAGCTTGATGATCATAAATCTCACCTTGAGATTTTCTTGGAGAAGAAGTTTGAGGAAGCACATAAATTATCGAATAAAAATCAGGATCTTGAGATGCAATTAAACAAAGAACAAGAAGACTGCAAAAGGATAAATTTAAAAATTGAAAAGTTTTTTAAAGCTTATTGCCGGTACATTAAAGCACAGGAGGAATTGAAAAGGTCACAAGCTCGTTTTCAGAAGTTTGGAGATCAACTTGGCTTAGATATTTCAAAGCTTGGTGCAAGCGAAGAAGATTTAAGTATAAATATTTTAAGTGATGGAGATCATAATGGTGATTTTCAAGAAAGCACTCCCTTTGACATTATACTAAATAGCAGTTCATCATTGAAAAAGATCTCACTTGTCCACCCAGAAGCCGTTGAAGAAGTGAAGTTGGGGAATGCATCAAAGAAGAGTAAACACTCTGCCCAATTGCTGCCGAAGCCTGATAGACTTGCAAGGTCAGGAGGACCGCCACTTTTTTCGGCTGAAGATCTCACAGTGGATGCAGACGCAGTCAAATCCAACCGTGAAAACAAGGAGGATTCGCCCTTTTATCTGCAGGATGGCTACAACATGAGGAAACGTGAAAAATTTCCTCCAAAGGATCGGAGCTCCGAGCGAGTATTGCCTTCTACAAGCATTGCTGCTAATGCTATTGATGAGCTCATTGAGGACATTGAGATTGACGAGAAATTTGACGGAATTGCGCCAGATGAAAATGGGATTGCGGATGCTAACATCAATTCATCGGATACTTCATCGCTGCCTCTGCCACTTCCTGCCATTCAGAATGCTTACAAAGAGTGTGAGGGTGATGATGAAGATGTAGATGTGGAGAGGGTTGATGCAGAGATGCTTGATATAGATCTGAATGATGAAGTGGATATAGAACTTTAGGTTCAGCCGTGCAGCAGAACCCTTTTAGCTCTCTCTCTCTCTCTCTCTCT

Network for GWHGAAEX002487

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	7	31	3.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.460
SRP064423	SRR2545915	Juvenile tuber	50.770
SRP108465	SRR5643513	five period of Gastrodia elata	32.860
	SRR5643514	five period of Gastrodia elata	36.180
	SRR5643515	five period of Gastrodia elata	33.270
	SRR5643524	five period of Gastrodia elata	35.490
	SRR5643525	five period of Gastrodia elata	19.200
	SRR5643528	five period of Gastrodia elata	21.640
	SRR5643658	five period of Gastrodia elata	25.230
	SRR5643659	five period of Gastrodia elata	31.270
	SRR5643660	five period of Gastrodia elata	32.980
	SRR5643661	five period of Gastrodia elata	32.820
	SRR5643662	five period of Gastrodia elata	32.500
	SRR5643663	five period of Gastrodia elata	35.870
	SRR5643664	five period of Gastrodia elata	39.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.730
SRP279888	Gastro	Gastrodia elata tuber	43.98
	Juven	Juvenile tuber	34.55
	Mother_Gastro	Mother tuber of Gastrodia elata	44.42
	Mother_Juven	Mother tuber of Juvenile	39.73