Detail information of GWHGAAEX002491/evm.TU.scaffold_120.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389860888|ref|YP_006363128.1| | 2.00E-18 | flap endonuclease-1 [Thermogladius cellulolyticus 1633] |
| KOG | KOG2518 | 7.00E-168 | 5'-3' exonuclease |
| nr | gi|672140501|ref|XP_008794055.1| | 0 | PREDICTED: exonuclease 1 [Phoenix dactylifera] |
| Swissprot | tr|Q60GC1|EXO1_ORYSJ | 0 | Exonuclease 1 |
| trEMBL | tr|M0S7E2|M0S7E2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P12510_001} |
| TAIR | AT1G29630 | 7.00E-168 | 5'-3' exonuclease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 74845 | 124100 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002491
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00752.16 | XPG_N | 1 | 98 | 2.50E-22 |
| PF00867.17 | XPG_I | 139 | 226 | 2.40E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10746 | EXO1 | Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0004518 | Molecular Function | nuclease activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.900 |
| SRR2545915 | Juvenile tuber | 2.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.510 |
| SRR5643514 | five period of Gastrodia elata | 4.380 | |
| SRR5643515 | five period of Gastrodia elata | 2.370 | |
| SRR5643524 | five period of Gastrodia elata | 3.170 | |
| SRR5643525 | five period of Gastrodia elata | 0.520 | |
| SRR5643528 | five period of Gastrodia elata | 0.230 | |
| SRR5643658 | five period of Gastrodia elata | 0.590 | |
| SRR5643659 | five period of Gastrodia elata | 1.110 | |
| SRR5643660 | five period of Gastrodia elata | 1.410 | |
| SRR5643661 | five period of Gastrodia elata | 1.750 | |
| SRR5643662 | five period of Gastrodia elata | 0.620 | |
| SRR5643663 | five period of Gastrodia elata | 0.890 | |
| SRR5643664 | five period of Gastrodia elata | 0.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.78 |
| Juven | Juvenile tuber | 2.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.99 | |
| Mother_Juven | Mother tuber of Juvenile | 1.85 |