Detail information of GWHGAAEX002493/evm.TU.scaffold_120.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|154251237|ref|YP_001412061.1| | 0 | 1-deoxy-D-xylulose-5-phosphate synthase [Parvibaculum lavamentivorans DS-1] |
| KOG | KOG0523 | 0 | Transketolase |
| nr | gi|571033885|gb|AHF22384.1| | 0 | 1-deoxy-D-xylulose-5-phosphate synthase [Dendrobium catenatum] |
| Swissprot | tr|Q6YU51|DXS2_ORYSJ | 0 | Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor) |
| trEMBL | tr|W0FI66|W0FI66_9ASPA | 0 | 1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313|EMBL:AHF22384.1} |
| TAIR | AT4G15560 | 0 | Deoxyxylulose-5-phosphate synthase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 276121 | 282748 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002493
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13292.5 | DXP_synthase_N | 65 | 350 | 4.90E-111 |
| PF02779.23 | Transket_pyr | 387 | 548 | 2.00E-41 |
| PF02780.19 | Transketolase_C | 566 | 689 | 7.50E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016114 | Biological Process | terpenoid biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0008661 | Molecular Function | 1-deoxy-D-xylulose-5-phosphate synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.280 |
| SRR2545915 | Juvenile tuber | 12.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.400 |
| SRR5643514 | five period of Gastrodia elata | 42.860 | |
| SRR5643515 | five period of Gastrodia elata | 30.980 | |
| SRR5643524 | five period of Gastrodia elata | 47.300 | |
| SRR5643525 | five period of Gastrodia elata | 18.510 | |
| SRR5643528 | five period of Gastrodia elata | 3.700 | |
| SRR5643658 | five period of Gastrodia elata | 7.900 | |
| SRR5643659 | five period of Gastrodia elata | 31.960 | |
| SRR5643660 | five period of Gastrodia elata | 21.080 | |
| SRR5643661 | five period of Gastrodia elata | 28.580 | |
| SRR5643662 | five period of Gastrodia elata | 18.490 | |
| SRR5643663 | five period of Gastrodia elata | 27.880 | |
| SRR5643664 | five period of Gastrodia elata | 14.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 77.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 75.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 100.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 57.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.32 |
| Juven | Juvenile tuber | 137.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.98 | |
| Mother_Juven | Mother tuber of Juvenile | 29.98 |