Detail information of GWHGAAEX002501/evm.TU.scaffold_120.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 5.00E-21 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|672181462|ref|XP_008810949.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|C0LGF4|FEI1_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase FEI 1 (Precursor) |
| trEMBL | tr|M0SYN3|M0SYN3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15040_001} |
| TAIR | AT5G62710 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 552552 | 572403 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002501
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 29 | 66 | 1.20E-09 |
| PF00069.24 | Pkinase | 325 | 592 | 6.90E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XIIIa |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.410 |
| SRR2545915 | Juvenile tuber | 4.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.910 |
| SRR5643514 | five period of Gastrodia elata | 3.780 | |
| SRR5643515 | five period of Gastrodia elata | 2.980 | |
| SRR5643524 | five period of Gastrodia elata | 3.080 | |
| SRR5643525 | five period of Gastrodia elata | 2.130 | |
| SRR5643528 | five period of Gastrodia elata | 1.810 | |
| SRR5643658 | five period of Gastrodia elata | 1.580 | |
| SRR5643659 | five period of Gastrodia elata | 3.860 | |
| SRR5643660 | five period of Gastrodia elata | 4.290 | |
| SRR5643661 | five period of Gastrodia elata | 4.240 | |
| SRR5643662 | five period of Gastrodia elata | 4.820 | |
| SRR5643663 | five period of Gastrodia elata | 6.370 | |
| SRR5643664 | five period of Gastrodia elata | 6.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.98 |
| Juven | Juvenile tuber | 3.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.63 | |
| Mother_Juven | Mother tuber of Juvenile | 2.13 |