Gene detail

Detail information of GWHGAAEX002502/evm.TU.scaffold_120.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392397594\|ref\|YP_006434195.1\|	3.00E-11	RRM domain-containing RNA-binding protein [Flexibacter litoralis DSM 6794]
KOG	KOG0127	0	Nucleolar protein fibrillarin NOP77 (RRM superfamily)
nr	gi\|672137061\|ref\|XP_008792243.1\|	0	PREDICTED: RNA-binding protein 28 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q39061\|CP33_ARATH	5.00E-13	RNA-binding protein CP33, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|M0S0I8\|M0S0I8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P16800_001}
TAIR	AT2G21440	0	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000118	603017	644138	+

Transcript Sequence
>GWHTAAEX002502 TGAGACGGTCAGATTTTTATAAAACTAACTAACCTAATCGCGCTAAAAATCTAATTGCTAGCCTACAGCTTCCTCTTCCCCCGCGTTTCTTCTAATCGCTAACCTGATCCGCCGCTGCCTATTCGCATACTGCGCTCTTCCCGGAAGACTAAGACGGCGCAGAAGCCTAACCGCGTCCTCCTCCCTTCTTGGAAGACGAATTACTAAGACGACGACGACACCAGTGACGAACAAAAACGAAGCCCTTCCTAGATCGGGCAGTTGTCCTCGTGTTTTGTCGGCCTCTTTGTGATTTTTTATCAAGCCCGTGGCGAACGAAGACGCCACCTGTGAACGAATCGAAGAAGCTTCAGTTTTTTCTGATCCGTGGAGTGTTTCTCGGCTATTGTCAGTGAGCGGTTGCATTCTTCCTCAAGTGTGAATCAGATATGGGAAAAAGGAAGAGGGATGAGAATGGCAGAGCAGGCGGGGATCACTGCCCTGCTACAGTGTTTGTTTCAAATCTTCCTTACTCATTTCAGTCTTCCCAGCTGGAAGATGCATTTGGCGAGGTGGGACCTGTGAGGCGTTGCTTTGTGGTCACCAAGAAAGGATCCGATGCAAATCGTGGCTTTGGGTTTGTACAATTTGCCACCGCTGAAGATGCTCAGCGTGCCATTCAGATGAAAAATGGCTTCTCAATAGGTGGTCGAAAAATAAAATCTGAACTTGCAATGCATCGGCTTTCTCGGGATATTCGCTCTAAGAAAGCAAACAATGAAGAAACATATCTGCGTGGAGAAGCAAAGCAAGCACATAAAGTTGCTGAAAAGGAAACTTCCACATCACATGTTTTGGAAATTGCTGGCGATGATAAACCTCCTGGCTCTGTAACTGTTTTAAATAGTGTTTTTTTTGATAAAGAAGATGGCTCTGGAAAGCAGAGGGTTGCAAGGACAGTGATATTTGGAGGTTTACTTGATTCGGAAATGGCAGATGAAGTAATCTGCCTGGCTAAGGAGGCTGGAATCATTAGCACATTAACTTATCCTCTTCCCAAAGAAGAGCTCGATCATCATGGGCTTGCTAGAGATGGTTGCAAGTTGGAAGCTGCATCAGTAGTCTACAAAAGTGTCAAAGCAGCACGCCTTGCTGTTTCAATGTTGCATCAGCAAGAGGTAAAGGGTGGATGTGTTTGGGCTCGCCAGTTGGGTGGAGAGGGTTCAAAAGCAAGAAGGTGGAGATTAATAGTCAGAAACCTTCCTTTCAAGGTGACGGCTAACGAAATTAAATGTATTTTTTCTTCAGCAGGGTTTGTATGGGATGTGTGCATTCCACATAGAACGGAAGAAGGGCTGTCTAAGGGCTTTGCTTTTGTCTCTTTCACATGTAAGAAGGATGCAGAAAATGCAATTCAAGATATCAACGGGAAATTTGTTGCAAAAAGACCTGTTGCTGTTGATTGGGCAGTTCCCAAAAAATTATATGCAAATGCTGTTAAATCTTCTACTGAAGAGGGGAAAACACCTGGTGGAAATGAAGATTTTGATGAAAGTGAAGACAGTTTAGTTGCAGAAGTTGATGCTGAAGTTGTTGAAAATACAGAGCATCACAATGGTAACAGCAATCTAGATGAGGCGGCTTGTGATTCCAATGGAAATGAACCTCGTATTACCGAGGATGATTTTAGCGCAGAGGCAGAAGTTGCAAGGAAAGTTTTTGAAAATTTGATTAAATCATCTTTAAATACTAGCAACTCTGATGCAACTAATTGCATTAAAAAAAGTGAAAACATGGTTAATTCCCTCACCAAGGGGCCTTCAGTTACTGGAGTAACTTTATGTACTTCTGAAAAAAGAGAGATAGAACAATTGAAGCATACATGCCGAGCCATAACTGAGAAACTTGCTGACCTTGATCGAACCGTTTTCATAAGCAATTTGCCATTCGAAATTGATAGTGAGGATGTGAAACAAAGGTTTTCTATATTTGGAGAGGTGCAGACATTTGTACCTGTACTCCATCAACTCACCAAGCGACCTAGAGGTACTGCTTTTCTCAAATTTAGAACAATAGCTGAAGCCGATGCTGCAGTTTCTTCTGCAAATGATGCCAGCGGATTAGGAATTATTCTGAAGGGAAGGCAACTTAAAGTCTTAAAGGCGCTGGACAAAGAATCTGCTCACAAGAAGGATCTTGAAAAGTTCAAGATTGAGGTTCAAGATCGGCGTAATCTATATCTGGCAAAGGAAGGTGAAATACATGTTGATAGTCCAGCTGCTGAAGGGGTATCAAAGGCCGACATGGAGAAACGTGAGATGTTGGCAAAAAAGAAGATTGAAATGCTGCGATCTCCAAAGTTTCATGTATCCAGGACTAGGCTTATTATATATAACGTGCCAAAGGCTATGAGCCAAGATGAAGTGAAGAAAATGTGTATAGATGCAGTTCTTTCCCGGGCCTCAAAGCAGAATCCTGAAGTTCTTAAGGTAAAACTCTTGAAGGACGATAAAAAGAATCCAGCACTTACAGCTAGACATTCACGTGGTGTTGCTTTTGTTGATTTCAAGGAGCATGAGCATGCTGTTGTGGCATTAAGAGTCCTCAATAATAATCCAGGGACGTTTAGTTCAGAGCGGCGTCCTATTGTGGACTTTGCTCTTGAGAACCTCCATAAATTAAGGTTACAGAAAGCCCAATCAGATACAGTTGGGCTGAGAGACTCTTCTTCTCATGCTGCAAATTCGGCAAAGGAAAAGACTAAAAAGATGCTACTGCACCCATCAAAGCATCCGAGAGGACGCCAAGATAAGGCGTCTAGAATAAGTGAACCTGCTGATCAGACCAGAAATGATGCCCAAATGCCAGAGCAGGACAGAGAAACAAGCAGAAAAGGTGCTGCTGGAGCCAGAAAGACCAGGCGATTTTCTGCGCAAAACAAAATGCTAGACTCTGCAAAAGGCGGCAACATAAAACCCGATTCCGATGCTGGTTTGATAGCTAAACAAACACATTTGAAAACAGCAAAAAATGTTCGTTCAAGGCTTAAGGCTTCCACAAGGACTAATGTTAAGCTCAGGCCCAGTAACGAAGAGTCGATGGGGAAACTCAGGAAAAGGAAGGCTCAAGCTGCTAATGACGAGGTAAAACAGGAAAAGCCTCCCACAAAGCAAAAGAAGAGAAAGAAATCCTCCACAAAAGAAGAAGTGGATAATTTGGACAGACTGATTGAGAAATATCGCTCCAAGTTTGCTGGTATTCATTCTGCCAAATCCAATACTGCTACTGCTGCTCCTCAAACACCTGGCAACCATAAAGTGAGAAGATGGTTTGAGTTGGCATAGTGGAACTTTTTTTCATGTTAATAAATAGCTAAATCATTTTTAAATTATTGTTATTATTATTTATTAATGCTAGTGTAAGCTGAAGTTGAATAGTGTCTTTATAGTATTTGTTGTATGCATTTTATTATAAACATAAAGATTAAATACTTGGTTTATTGCAATTTTCATGCTTTTCTTGAGTTTGCGAATATCAAACTTGTTGGCATTAAATATGCAAAGGACTATTCGCCTCATCGT

Network for GWHGAAEX002502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	21	91	3.90E-20
PF00076.21	RRM_1	266	334	6.40E-14
PF00076.21	RRM_1	493	554	3.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14573	NOP4, RBM28	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	54.350
SRP064423	SRR2545915	Juvenile tuber	55.890
SRP108465	SRR5643513	five period of Gastrodia elata	31.420
	SRR5643514	five period of Gastrodia elata	29.080
	SRR5643515	five period of Gastrodia elata	30.950
	SRR5643524	five period of Gastrodia elata	30.120
	SRR5643525	five period of Gastrodia elata	24.900
	SRR5643528	five period of Gastrodia elata	27.830
	SRR5643658	five period of Gastrodia elata	27.290
	SRR5643659	five period of Gastrodia elata	32.890
	SRR5643660	five period of Gastrodia elata	36.210
	SRR5643661	five period of Gastrodia elata	33.010
	SRR5643662	five period of Gastrodia elata	37.130
	SRR5643663	five period of Gastrodia elata	36.690
	SRR5643664	five period of Gastrodia elata	38.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.930
SRP279888	Gastro	Gastrodia elata tuber	43.94
	Juven	Juvenile tuber	44.11
	Mother_Gastro	Mother tuber of Gastrodia elata	34.66
	Mother_Juven	Mother tuber of Juvenile	57.51