Detail information of GWHGAAEX002504/evm.TU.scaffold_120.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220919241|ref|YP_002494545.1| | 6.00E-34 | amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG1237 | 0 | H+/oligopeptide symporter |
| nr | gi|743790946|ref|XP_010923294.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Elaeis guineensis] |
| Swissprot | tr|Q9M9V7|PTR8_ARATH | 0 | Protein NRT1/ PTR FAMILY 2.9 |
| trEMBL | tr|D7TX12|D7TX12_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI35037.3} |
| TAIR | AT1G18880 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 687554 | 691755 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002504
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 93 | 504 | 3.00E-82 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.070 |
| SRR2545915 | Juvenile tuber | 6.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.920 |
| SRR5643514 | five period of Gastrodia elata | 2.680 | |
| SRR5643515 | five period of Gastrodia elata | 6.490 | |
| SRR5643524 | five period of Gastrodia elata | 3.320 | |
| SRR5643525 | five period of Gastrodia elata | 0.160 | |
| SRR5643528 | five period of Gastrodia elata | 2.480 | |
| SRR5643658 | five period of Gastrodia elata | 0.190 | |
| SRR5643659 | five period of Gastrodia elata | 7.850 | |
| SRR5643660 | five period of Gastrodia elata | 10.390 | |
| SRR5643661 | five period of Gastrodia elata | 7.260 | |
| SRR5643662 | five period of Gastrodia elata | 8.080 | |
| SRR5643663 | five period of Gastrodia elata | 1.880 | |
| SRR5643664 | five period of Gastrodia elata | 3.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.29 |
| Juven | Juvenile tuber | 8.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.95 | |
| Mother_Juven | Mother tuber of Juvenile | 13.09 |