Detail information of GWHGAAEX002505/evm.TU.scaffold_120.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479147472|ref|YP_007777901.1| | 7.00E-31 | Fibronectin type III domain./Regulator of chromosome condensation (RCC1) repeat [Roseburia intestinalis XB6B4] |
| KOG | KOG1426 | 2.00E-113 | FOG: RCC1 domain |
| nr | gi|743759748|ref|XP_010933610.1| | 1.56E-147 | PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 1.00E-33 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|M0TBC0|M0TBC0_MUSAM | 1.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29750_001} |
| TAIR | AT1G27060 | 2.00E-113 | Regulator of chromosome condensation (RCC1) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 696113 | 772720 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002505
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 21 | 69 | 9.10E-10 |
| PF00415.17 | RCC1 | 72 | 120 | 6.00E-12 |
| PF00415.17 | RCC1 | 125 | 173 | 8.40E-15 |
| PF13540.5 | RCC1_2 | 218 | 247 | 2.10E-05 |
| PF00415.17 | RCC1 | 347 | 396 | 6.10E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.870 |
| SRR2545915 | Juvenile tuber | 6.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.750 |
| SRR5643514 | five period of Gastrodia elata | 6.590 | |
| SRR5643515 | five period of Gastrodia elata | 6.650 | |
| SRR5643524 | five period of Gastrodia elata | 6.370 | |
| SRR5643525 | five period of Gastrodia elata | 8.370 | |
| SRR5643528 | five period of Gastrodia elata | 6.030 | |
| SRR5643658 | five period of Gastrodia elata | 6.130 | |
| SRR5643659 | five period of Gastrodia elata | 6.790 | |
| SRR5643660 | five period of Gastrodia elata | 6.950 | |
| SRR5643661 | five period of Gastrodia elata | 6.270 | |
| SRR5643662 | five period of Gastrodia elata | 6.110 | |
| SRR5643663 | five period of Gastrodia elata | 6.020 | |
| SRR5643664 | five period of Gastrodia elata | 6.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.15 |
| Juven | Juvenile tuber | 10.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.52 | |
| Mother_Juven | Mother tuber of Juvenile | 14.56 |