Detail information of GWHGAAEX002508/evm.TU.scaffold_120.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379012570|ref|YP_005270382.1| | 0 | plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030] |
| KOG | KOG0205 | 0 | Plasma membrane H+-transporting ATPase |
| nr | gi|590667284|ref|XP_007037195.1| | 0 | H(+)-transporting atpase plant/fungi plasma membrane type [Theobroma cacao] |
| Swissprot | tr|P22180|PMA1_SOLLC | 0 | Plasma membrane ATPase 1 |
| trEMBL | tr|A0A061FWS9|A0A061FWS9_THECC | 0 | H(+)-transporting atpase plant/fungi plasma membrane type {ECO:0000313|EMBL:EOY21696.1} |
| TAIR | AT5G62670 | 0 | H(+)-ATPase 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 996790 | 1040995 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002508
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00690.25 | Cation_ATPase_N | 20 | 83 | 9.60E-14 |
| PF00122.19 | E1-E2_ATPase | 132 | 310 | 2.30E-46 |
| PF00702.25 | Hydrolase | 327 | 604 | 5.30E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01535 | PMA1, PMA2 | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0120029 | Biological Process | proton export across plasma membrane |
| GO:0008553 | Molecular Function | hydrogen-exporting ATPase activity, phosphorylative mechanism |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 67.310 |
| SRR2545915 | Juvenile tuber | 104.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 113.040 |
| SRR5643514 | five period of Gastrodia elata | 128.910 | |
| SRR5643515 | five period of Gastrodia elata | 119.920 | |
| SRR5643524 | five period of Gastrodia elata | 131.350 | |
| SRR5643525 | five period of Gastrodia elata | 139.780 | |
| SRR5643528 | five period of Gastrodia elata | 92.070 | |
| SRR5643658 | five period of Gastrodia elata | 140.570 | |
| SRR5643659 | five period of Gastrodia elata | 105.170 | |
| SRR5643660 | five period of Gastrodia elata | 99.450 | |
| SRR5643661 | five period of Gastrodia elata | 98.320 | |
| SRR5643662 | five period of Gastrodia elata | 136.850 | |
| SRR5643663 | five period of Gastrodia elata | 127.870 | |
| SRR5643664 | five period of Gastrodia elata | 93.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 90.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 64.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 89.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 91.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 71.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 79.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 74.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 73.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 77.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 61.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 96.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 96.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 84.33 |
| Juven | Juvenile tuber | 117.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.95 | |
| Mother_Juven | Mother tuber of Juvenile | 46.87 |