Detail information of GWHGAAEX002509/evm.TU.scaffold_120.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310819052|ref|YP_003951410.1| | 2.00E-18 | Ser/Thr protein kinase [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG0600 | 0 | Cdc2-related protein kinase |
| nr | gi|743849501|ref|XP_010939643.1| | 0 | PREDICTED: cyclin-dependent kinase C-2 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q5JK68|CDKC2_ORYSJ | 0 | Cyclin-dependent kinase C-2 |
| trEMBL | tr|M0SVW6|M0SVW6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05370_001} |
| TAIR | AT5G10270 | 0 | cyclin-dependent kinase C;1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 1052261 | 1062466 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002509
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 48 | 334 | 1.00E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_CDK-CRK7-CDK9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 88.270 |
| SRR2545915 | Juvenile tuber | 62.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 56.670 |
| SRR5643514 | five period of Gastrodia elata | 52.070 | |
| SRR5643515 | five period of Gastrodia elata | 51.760 | |
| SRR5643524 | five period of Gastrodia elata | 49.820 | |
| SRR5643525 | five period of Gastrodia elata | 73.600 | |
| SRR5643528 | five period of Gastrodia elata | 61.450 | |
| SRR5643658 | five period of Gastrodia elata | 93.590 | |
| SRR5643659 | five period of Gastrodia elata | 60.420 | |
| SRR5643660 | five period of Gastrodia elata | 68.980 | |
| SRR5643661 | five period of Gastrodia elata | 66.420 | |
| SRR5643662 | five period of Gastrodia elata | 71.250 | |
| SRR5643663 | five period of Gastrodia elata | 68.450 | |
| SRR5643664 | five period of Gastrodia elata | 67.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 88.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 60.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 75.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 111.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 120.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 134.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 112.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 107.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 63.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 85.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 80.52 |
| Juven | Juvenile tuber | 81.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.64 | |
| Mother_Juven | Mother tuber of Juvenile | 51.15 |