Gene detail

Detail information of GWHGAAEX002512/evm.TU.scaffold_120.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743887151\|ref\|XP_010910318.1\|	5.04E-110	PREDICTED: uncharacterized protein LOC105036256 [Elaeis guineensis]
trEMBL	tr\|A0A068TMA0\|A0A068TMA0_COFCA	2.00E-103	Coffea canephora
TAIR	AT2G16050	1.00E-60	Cysteine/Histidine-rich C1 domain family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000118	1264961	1266408	-

Transcript Sequence
>GWHTAAEX002512 TATATATATATATATATGCGTGTATTTCTCTGAACTCATGAGATTATTCTAAGAAACTCCTTTCTTGCCTAACCATGAAATATGGTGAGAGGAGCCACTTCAGCCACCCACAGCACAAGCTGCGCTTCGGGCACTCGGAGCTTCCCTTCAAGTGTGACGGCTGTCGCGATGTTGGCATCGGTTCCAGCTTCAAGTGCTCCATATGCGACTTCGACCTCCACACACACTGCGCCGCCTCCACCGCCGGCTCCGCCCTCCGCCACCCTTTCTACCCTAAATGCCTCTTCCATTTTCTCCCTCGCCCACCCGGCGACACCCCTCGCTACTGCAATGCTTGCATACGCGTCGTTGCAGGCTTTGTCTACCACTGCCGCACGTGCGGGTTCGACCTGCACCCCTGTTGCGCCGCCCTCCCGCATGTGCTCCAGGCTGACGATGGCCTCCGACTCCACCTTAGCCGTCGGGCGGAAGCCCCGTGCCATAGGTGCGGGAGGACGGGGAAGAGCTGGAGTTATAGGAGCGAGTGCAAAAAGTATGACTTGCACGTGGCGTGCGCTATGGAGATGTTGGTGGACGGCTATGGTCGCGGAGGTAACAACGGCGAAGCGAAAAAAGGGGCTATTTTGGCAATTAGAGGGGCGGCGGTGAGCCATCAACGTAAAGAGAAGGGGAAAGTGAGCAAGGGTTGCGAATTGGCAGCGACGGCGATGCAATTTATTATTTCGGCCGTGCTCGGGGATCCGACGGCTGCGATTGCTGGGGTTGTTGGCTCGTTGATATTTCGACGGTGAATGACTTTGTAGGGGGGTTTGGATTGGTTGAATTATGGTGAGGGTGGTTTAATCACTGTTGAATCCATGCATATGGATAGGAGGTTCCAAGATGGAAATGGAGAGGTCCTTCATATTAATATTTTCTCTTTTTCTCTAGATTTTCTTTTATAGTATTGTTCATTAGATAAGTAACTACTATTTTATACATCATGCTCACTTGCTACATCCGGCTTTAAAGGAATAAATTTTAGATTTTTAACTGCATTACTAGACTACTCTTGATAGGTCATCATCATTTTTTCCCTTTGGAAGTTGATTCTTACAAAATTGATACAAAGGATCTCTTTCTCTATTGTAGTAGGCTAGTGCACAATAAAGAAAGATAGTGTAGGCATTTTCTTTGATCCTCCTTTGAACATACTTCACAAATAACAAAATGTTCCAACAACATTTTTATATCAACAATGGTGCTTGAGAATTTGGTTAGGATTAGAATATGCCACATCTTATAGTTATAAAATAAAATTTATTATCATTATTTTTCATCTACTCGAATCATAACATATAATCATATTATATACATCACACCACAGTACCACGATATCCGCATATTAGCGCTCCATTAGTAGCATAGCTTATATTATATGCAAATCAAAATCCGCAAAATTTGCTATC

Network for GWHGAAEX002512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03107.15	C1_2	9	53	6.60E-09
PF03107.15	C1_2	78	111	5.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0035556	Biological Process	intracellular signal transduction

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.250
SRP064423	SRR2545915	Juvenile tuber	1.050
SRP108465	SRR5643513	five period of Gastrodia elata	3.940
	SRR5643514	five period of Gastrodia elata	3.930
	SRR5643515	five period of Gastrodia elata	4.690
	SRR5643524	five period of Gastrodia elata	4.170
	SRR5643525	five period of Gastrodia elata	31.010
	SRR5643528	five period of Gastrodia elata	28.550
	SRR5643658	five period of Gastrodia elata	24.270
	SRR5643659	five period of Gastrodia elata	1.960
	SRR5643660	five period of Gastrodia elata	3.100
	SRR5643661	five period of Gastrodia elata	4.090
	SRR5643662	five period of Gastrodia elata	5.140
	SRR5643663	five period of Gastrodia elata	4.170
	SRR5643664	five period of Gastrodia elata	3.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.760
SRP279888	Gastro	Gastrodia elata tuber	8.54
	Juven	Juvenile tuber	1.78
	Mother_Gastro	Mother tuber of Gastrodia elata	8.34
	Mother_Juven	Mother tuber of Juvenile	1.59