Detail information of GWHGAAEX002514/evm.TU.scaffold_120.39


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672119577|ref|XP_008783030.1|3.25E-19PREDICTED: RPM1-interacting protein 4 isoform X1 [Phoenix dactylifera]
Swissprottr|Q8GYN5|RIN4_ARATH1.00E-10RPM1-interacting protein 4
trEMBLtr|W5I9H6|W5I9H6_WHEAT8.00E-20Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7DS_9EFDFB0C1.1} (Fragment)
TAIRAT5G558501.00E-16RPM1-interacting protein 4 (RIN4) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011812859371302844-
Transcript Sequence

Network for GWHGAAEX002514

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05627.10AvrRpt-cleavage45817.90E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.700
SRR2545915Juvenile tuber8.340
SRP108465SRR5643513five period of Gastrodia elata6.190
SRR5643514five period of Gastrodia elata7.370
SRR5643515five period of Gastrodia elata6.970
SRR5643524five period of Gastrodia elata9.180
SRR5643525five period of Gastrodia elata5.730
SRR5643528five period of Gastrodia elata11.810
SRR5643658five period of Gastrodia elata7.760
SRR5643659five period of Gastrodia elata3.490
SRR5643660five period of Gastrodia elata4.000
SRR5643661five period of Gastrodia elata4.900
SRR5643662five period of Gastrodia elata5.580
SRR5643663five period of Gastrodia elata4.710
SRR5643664five period of Gastrodia elata5.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.970
SRR6049655Rhizomagastrodiae_C368-T10_good_17.580
SRR6049656Rhizomagastrodiae_C368-T07_good_15.230
SRR6049657Rhizomagastrodiae_C368-T07_good_14.860
SRR6049658Rhizomagastrodiae_C368-T04_good_15.220
SRR6049659Rhizomagastrodiae_C368-T04_good_16.750
SRR6049660Rhizomagastrodiae_C368-T01_good_15.650
SRR6049661Rhizomagastrodiae_C368-T04_good_13.380
SRR6049662Rhizomagastrodiae_C368-T01_good_18.890
SRR6049663Rhizomagastrodiae_C368-T01_good_19.710
SRR6049664Rhizomagastrodiae_C368-T10_good_15.820
SRR6049665Rhizomagastrodiae_C368-T10_good_15.820
SRP279888GastroGastrodia elata tuber 2.49
JuvenJuvenile tuber1.64
Mother_GastroMother tuber of Gastrodia elata 4.11
Mother_JuvenMother tuber of Juvenile 4.66