Gene detail

Detail information of GWHGAAEX002516/evm.TU.scaffold_120.43

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743759474\|ref\|XP_010932456.1\|	PREDICTED: uncharacterized protein LOC105053111 [Elaeis guineensis]
trEMBL	tr\|J3NEP9\|J3NEP9_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB12G24570.1}
TAIR	AT3G04605	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000118	1471354	1486578	-

Transcript Sequence
>GWHTAAEX002516 ATTTTCTCTCCTTTTTAGAAACCTAAAAATGCGCTTCGCCGGACTTAAAATCAGTAATGCAGTTCGCAGTTCTACCTGCAAAATTTTTTTTCTTCTATCCGCCTTCCGGACGTGCAAAAAATTTCCTTTCATTGTCTTGACTAGATCGAACTCTTTCGTTTCCGCACTTTGCGGGAAGATCCTTTCTGAATACTGATCGCTGAGGCCGCTTCTTTCACCCTACTCTGGAAATATCGCAGCATTCACGGGATTCTTCTTGTCATTACACACGCTTGTATTTATTCCACCGCAGTGCAAGGTGGAATTTAGATTGTTTGGACTGATGCTTGATGGCCAAGCGTGACCAAGTGATTGGCCAGAATTCTGAATTTGCTCTTTCTCATTGCCATGATTTCATTATGGGGTCCCCTGTTTACAAGCTTGATTTAAGTCATGAACATGAACAAAATCTTGTTCTAGATCACAGTATAGACAGCAGGCTGGTTTTGGGATACCACCAGCTTCTCATGAGCCACGCCCATGAGGAACATCATGCCCAAGAAGAAGATGAAGGCCATGATCACAACTGTGAGATTGGTATGTATCAAAGCCATGATCAGATCATCCTTTCTGGGAATCATGAAATTTCGCTTAGGAATCTTTCTTTGGAGCCGAACCTCGAGCAGATTTCCGCGTCTCCTTCTCACCTAACCATGATCCCTTTTCTTCAGAACCGATTGGTTGTGAGCCCGGACAATGTGCTGCATGTGGGGCAGGAGTTCCCAGATGCGAAGAGCTGCAGGAGAGCTTTAAGAGATGCAGCGATCGCTTGCCGTTTTGAGATACAGACGGTGAAGTCAGACAAGTCTAGATTCACTGCAAAGTGTAGAGCCGAGGGATGCCCCTGGCGCATTCATGCTGCTAAGCTCCCTGGTGCTCCCATCTTCTCAATTAGAACCATCAATGAGAATCATAACTGCATCGGGATCAGCCATCTGGGGCATCAGCAGGCTTCTGTTCAGTGGGTTGCAGATTCTGTGGAGGAACGGCTTCGCGAGAATCCCCACTGCAAGCCTAAAGAGATTTTGGAGGAGATTCATCGTATTCATGGCATCACATTGTCTTACAAGCAGGCGTGGAGGGGGAAAGAGCGGATAATGGCATCCGTTCGTGGCTCATTCGAGCAAGGCTACCGTCTTTTACCGCAATATTGCGGGCAAGTCAGGCGGACAAATCCGGGGAGCATCGCATTGGTGTATGGAAATCATGACGATAACTGCTTTAAGCGCCTTTTCATCTCATTCTATGCTTCGATATACGGTTTTGTGCATGCTGGTCGGCCCCTCATTGGGCTCGATCGAACTCCTCTCAAGAGCAAGTATCTTGGAGCATTGCTTTTGGCCGCCGGGTTTGATGGAGATGGAGCCCTCTTTCCTCTCGCCTTCGGCGTCGTCAGCGAAGAAAGCGATGAGAACTGGGTTTGGTTCTTGTCAGAGCTGCACGTCCTTCTTGAAAACAACATGGAATGTATGCCGAGACTCACAATATTGTCGGATAGGCGGAAGGGTGTTGTTGATGGAGTAGATTTTAACTTTCCGACAGCATTTCATGGTTTCTGCATGGGACATCTGAGTGAGAGCTTCTGCAAAGAATTGCCACAGCATGCAAACTCAGTAAGCCTCATTTGGGAAGCTGCACATGCTCTCACTGTTATTGAATTTGAAGCCAAGCTACTGGAGATGGAAGGTATAGGAATGGATGCCGCTCGCTGGGTTCGAATGATCCCGCCTCGTCTCTGGGCGACGGCTTACTTTGAAGGCACACGTTACGGCCATTTAACGGCAAACATAGTAGAATCCTGGAGCACTTGGCTACTTGAGGTGATCAGCCTCCCCATAAACCAGATGATGGAGTGCATCCGTTGGCAACTGATGACGTGGTTCAATGAGAGACGGGAGGTGAGCAAGCAATGGTCGACCGTCTTGGTTCCATCTGCGGAGCGACGCTTATCGGAGGCTGTCGAACGAGCCCATGGGTGTCGAGTTGGAAGGGCTAATGAAGCCGAATTCGAAGTTGGTTCTCCTCACGAGGGAAACTACATTGTCGACATTCGCTGCAGATGCTGCCTCTGCCGCGGCTGGCAGCTATACGGCGTGCCTTGTGCGCACGGGGTGTCGGCGCTCCTCTTCTGCCGGCAGAATGTTCACACATACACGGATAGCTGCTTCACCGTTGCCGCTTATCGTAAGGTGTACTCGCAGACGATACATCCGATTCCGGACAAAAGCATCTGGAACGAACTCTCGGAAGGGAATGCCGACGAAGTGGAGGCTGCCATTAACCCACCCAAGCTGCTCCGTCCTCCCGTGAGGACAAGAAAAAAGCGAGCCCGAACCGAGGATCAACGGGGTCATTTGAAGCGGGTTGTTCGTTGCAGCAGGTGTAATCAGACTGGGCATTTCAGAACAACTTGTGCTGCTCCTATATGAGCTTTGGGCTGCTGCAGGCTATGATTTTTTTCTTCTCTTTATATAGATAGATTCAGGCATATGTGATGGCTGCTTAGGGACATAGTTTAGATTCTTATTAAGATAGTTATATTGCATTTTTTTGAAATGTGAACGGTACTGTAGCTTGTGCTGGTTAAGCTCAGTATTTATTACTTCAAATTTGAATCTCGCATAATTTACAATTTTTTTTTGGAAACTTTAGCACACTGCTATCTTGTTAGCTCCTCC

Network for GWHGAAEX002516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03108.14	DBD_Tnp_Mut	138	201	4.80E-25
PF10551.8	MULE	333	429	3.50E-14
PF04434.16	SWIM	584	612	0.0011

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.800
SRP064423	SRR2545915	Juvenile tuber	0.770
SRP108465	SRR5643513	five period of Gastrodia elata	1.940
	SRR5643514	five period of Gastrodia elata	2.320
	SRR5643515	five period of Gastrodia elata	1.410
	SRR5643524	five period of Gastrodia elata	1.680
	SRR5643525	five period of Gastrodia elata	0.690
	SRR5643528	five period of Gastrodia elata	0.570
	SRR5643658	five period of Gastrodia elata	0.570
	SRR5643659	five period of Gastrodia elata	1.590
	SRR5643660	five period of Gastrodia elata	1.370
	SRR5643661	five period of Gastrodia elata	2.040
	SRR5643662	five period of Gastrodia elata	0.750
	SRR5643663	five period of Gastrodia elata	1.170
	SRR5643664	five period of Gastrodia elata	0.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.600
SRP279888	Gastro	Gastrodia elata tuber	0.48
	Juven	Juvenile tuber	0.33
	Mother_Gastro	Mother tuber of Gastrodia elata	0.56
	Mother_Juven	Mother tuber of Juvenile	0.22