Detail information of GWHGAAEX002518/evm.TU.scaffold_120.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|257056515|ref|YP_003134347.1|2.00E-24protein kinase family protein [Saccharomonospora viridis DSM 43017]
KOGKOG06590Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7
nrgi|695009867|ref|XP_009391584.1|0PREDICTED: cyclin-dependent kinase D-1-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|P29620|CDKD1_ORYSJ0Cyclin-dependent kinase D-1
trEMBLtr|M0SD19|M0SD19_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P09020_001}
TAIRAT1G736900cyclin-dependent kinase D1;1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011816201051637078+
Transcript Sequence

Network for GWHGAAEX002518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.24Pkinase243022.20E-72
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CDK-CDK7

KEGG pathway

KO Enzyme pathway mapID
K02202CDK7 Basal transcription factors map03022
Nucleotide excision repairmap03420
Cell cyclemap04110

Gene Ontology

GO term OntologyName
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.370
SRR2545915Juvenile tuber15.380
SRP108465SRR5643513five period of Gastrodia elata16.420
SRR5643514five period of Gastrodia elata17.010
SRR5643515five period of Gastrodia elata16.850
SRR5643524five period of Gastrodia elata17.370
SRR5643525five period of Gastrodia elata26.880
SRR5643528five period of Gastrodia elata32.040
SRR5643658five period of Gastrodia elata26.130
SRR5643659five period of Gastrodia elata19.360
SRR5643660five period of Gastrodia elata17.570
SRR5643661five period of Gastrodia elata20.340
SRR5643662five period of Gastrodia elata17.830
SRR5643663five period of Gastrodia elata15.800
SRR5643664five period of Gastrodia elata14.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.260
SRR6049655Rhizomagastrodiae_C368-T10_good_115.830
SRR6049656Rhizomagastrodiae_C368-T07_good_119.270
SRR6049657Rhizomagastrodiae_C368-T07_good_115.490
SRR6049658Rhizomagastrodiae_C368-T04_good_117.910
SRR6049659Rhizomagastrodiae_C368-T04_good_117.340
SRR6049660Rhizomagastrodiae_C368-T01_good_117.350
SRR6049661Rhizomagastrodiae_C368-T04_good_117.600
SRR6049662Rhizomagastrodiae_C368-T01_good_119.380
SRR6049663Rhizomagastrodiae_C368-T01_good_119.140
SRR6049664Rhizomagastrodiae_C368-T10_good_121.170
SRR6049665Rhizomagastrodiae_C368-T10_good_121.170
SRP279888GastroGastrodia elata tuber 22.24
JuvenJuvenile tuber17.90
Mother_GastroMother tuber of Gastrodia elata 22.83
Mother_JuvenMother tuber of Juvenile 18.24