Detail information of GWHGAAEX002519/evm.TU.scaffold_120.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434400469|ref|YP_007134473.1| | 4.00E-21 | WD-40 repeat-containing protein [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG4155 | 2.00E-114 | FOG: WD40 repeat |
| nr | gi|743877893|ref|XP_010908032.1| | 7.79E-122 | PREDICTED: WD repeat-containing protein tag-125-like [Elaeis guineensis] |
| Swissprot | tr|Q0DYP5|C3H17_ORYSJ | 1.00E-12 | Zinc finger CCCH domain-containing protein 17 |
| trEMBL | tr|F6HQI2|F6HQI2_VITVI | 4.00E-121 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56939.1} |
| TAIR | AT4G34380 | 2.00E-114 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 1659084 | 1660659 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002519
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 194 | 229 | 0.0028 |
| PF00400.31 | WD40 | 287 | 316 | 0.0047 |
| PF00400.31 | WD40 | 328 | 366 | 0.00012 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.350 |
| SRR2545915 | Juvenile tuber | 4.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.190 |
| SRR5643514 | five period of Gastrodia elata | 7.770 | |
| SRR5643515 | five period of Gastrodia elata | 21.850 | |
| SRR5643524 | five period of Gastrodia elata | 9.610 | |
| SRR5643525 | five period of Gastrodia elata | 126.130 | |
| SRR5643528 | five period of Gastrodia elata | 85.240 | |
| SRR5643658 | five period of Gastrodia elata | 177.680 | |
| SRR5643659 | five period of Gastrodia elata | 7.490 | |
| SRR5643660 | five period of Gastrodia elata | 5.440 | |
| SRR5643661 | five period of Gastrodia elata | 11.030 | |
| SRR5643662 | five period of Gastrodia elata | 3.680 | |
| SRR5643663 | five period of Gastrodia elata | 3.980 | |
| SRR5643664 | five period of Gastrodia elata | 11.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.86 |
| Juven | Juvenile tuber | 4.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 177.14 | |
| Mother_Juven | Mother tuber of Juvenile | 90.28 |