Detail information of GWHGAAEX002525/evm.TU.scaffold_120.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG09352.00E-93Clathrin adaptor complex, small subunit
nrgi|719969416|ref|XP_010268368.1|3.66E-97PREDICTED: AP-2 complex subunit sigma [Nelumbo nucifera]
Swissprottr|Q84WL9|AP2S_ARATH5.00E-94AP-2 complex subunit sigma
trEMBLtr|A0A068UFZ7|A0A068UFZ7_COFCA2.00E-97Coffea canephora
TAIRAT1G478302.00E-93SNARE-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011818299271853316+
Transcript Sequence

Network for GWHGAAEX002525

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01217.19Clat_adaptor_s11415.80E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11827AP2S1 Endocytosis map04144
Endocrine and other factor-regulated calcium reabsorptionmap04961
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0015031Biological Processprotein transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.370
SRR2545915Juvenile tuber35.780
SRP108465SRR5643513five period of Gastrodia elata24.840
SRR5643514five period of Gastrodia elata29.540
SRR5643515five period of Gastrodia elata32.440
SRR5643524five period of Gastrodia elata30.050
SRR5643525five period of Gastrodia elata44.450
SRR5643528five period of Gastrodia elata59.140
SRR5643658five period of Gastrodia elata47.100
SRR5643659five period of Gastrodia elata22.290
SRR5643660five period of Gastrodia elata19.690
SRR5643661five period of Gastrodia elata19.090
SRR5643662five period of Gastrodia elata18.140
SRR5643663five period of Gastrodia elata18.560
SRR5643664five period of Gastrodia elata14.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.180
SRR6049655Rhizomagastrodiae_C368-T10_good_115.350
SRR6049656Rhizomagastrodiae_C368-T07_good_120.670
SRR6049657Rhizomagastrodiae_C368-T07_good_115.320
SRR6049658Rhizomagastrodiae_C368-T04_good_118.230
SRR6049659Rhizomagastrodiae_C368-T04_good_114.770
SRR6049660Rhizomagastrodiae_C368-T01_good_115.390
SRR6049661Rhizomagastrodiae_C368-T04_good_117.500
SRR6049662Rhizomagastrodiae_C368-T01_good_119.410
SRR6049663Rhizomagastrodiae_C368-T01_good_121.410
SRR6049664Rhizomagastrodiae_C368-T10_good_126.160
SRR6049665Rhizomagastrodiae_C368-T10_good_126.160
SRP279888GastroGastrodia elata tuber 27.13
JuvenJuvenile tuber25.78
Mother_GastroMother tuber of Gastrodia elata 68.55
Mother_JuvenMother tuber of Juvenile 61.79