Gene detail

Detail information of GWHGAAEX002526/evm.TU.scaffold_120.55

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|514754456\|ref\|XP_004963041.1\|	5.52E-55	PREDICTED: B3 domain-containing protein Os12g0592300-like [Setaria italica]
Swissprot	tr\|Q2QMT2\|Y1223_ORYSJ	5.00E-44	B3 domain-containing protein Os12g0592300
trEMBL	tr\|K3ZCZ3\|K3ZCZ3_SETIT	2.00E-55	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si024423m}
TAIR	AT1G49480	9.00E-12	related to vernalization1 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000118	1882242	1895057	-

Transcript Sequence
>GWHTAAEX002526 TGCTATCTTAATAACTTTTCAAATGTCGGTGAACCAAACAGCCCCCAAAGTTCATTCCTTTCTTGAAATGTTGACTTGAAGAGGTTCAAAGTTCAACTTTACTTTTTTCAAATCAAGTTTATGCTAAAGGTTACAGCTTTTTGCTGATCAGGCCAATAAAAATGCAAAGAGATTGTATTTTTATGAACTCTGACATCTATTTTATGATCTTATTTTGTGGGATTTTTGGGGGTGTTTGGCAACCGGATTTATGCCCCTAAATTTATTATAGTTTTGCCAAATGAAATTTTATTTAGCGTAAATATTTCGGCCCTATATCCCATAAATTCTTTTAAATCTGGGTTTTGTTGAGCTTGAGGGGTCTGAGGAGGACAGATTCGAGGAAAAAAAGGTGTTGCATTGATTGAACTTCTTCTTCTAAAGCAGGGTTTCAGAATGGATGAGGAATGCAGGTATTGTGAAAAGTGGAAAGAGAAGCGCAGAAAGTTTGAGGAACATTTCTACTGGGGACATGTAGATGCAAAGAGGATGCATTTTTCCAAGTCCATGATTGGTGATTTTTCAAAATGCATGATCATACCTAAGAAGTTTATTGAGCACTTTACTGGAGAGTTGCTTGAAACTATTGAGCTGAAAGTTCCAAGCGGTGATATATGGCATGTTGAATTGAAGAAAACTAATGATGGAGTCATTCTTGATTGCGGGTGGAAAAATTTTGTAGACGCTCATGATATTCAACAAAATGACACGTTGGTTTTCAAGTATGATGGTTTTTCTTCTTTTCTTGTCTTAATGTTTGACCCAAGTGGCTGTGAGAAAGCTGCTTCTCATTGTGCAAAGAAAAGAGATCCTATGCATGGTTCATGTTCAACAGCTTCTGTCAAATTGGGTGGGCATAATTCCAATTTAAGTTCTTTTAGACATAGTGAACAAGCACAGGCTATAACCGAACATTATGAGAACCCAAGAGCAAATGGAAGTGCAGAAGAGAAAAGTGTGAAGGTGAGAAGGAATTCCAAAAGAAATTATGTACTCAAGGACCTCTTGGTTGGTTCCAGAAAAAAGAAAGCCTTAAAAGCACAAGAAAGTGGTGCTATAAAAGTCACAAAGAACCCAGTCAATGAAGTATCATCTGACAAGTGGTGTAGACCTAACGTCTTCATTGTTGCAAGAAAGGCTGGATTAAGAGATGAAGAAAAGAACAGATTGTTTAGCTTTACTGAAATAATTCAGACAGATAGGCCCTCTTTTGTTTCAATCATGGTGCCTTGCAGCGTTGTTAAAAGATTTTATATGACCGTTCCCATTGCCTTTGCGTTGGCGCACCTTCCTCGCACTAGCTCTAGCATTGTCCTCCAACTTCCAGACAAAGATAGACTATGGCAAGTGCAATGTTATGTTCAACCTCATTCAGTAGGGTTTACTACTGGATGGAAGAAGTTTGTTCATAACAACCGCTTGAAGGTAGGGGACATATGCTTTTTTGAGTTGGTGGAGATTCAGAAAGACATCTTAATGAATGTTTATATCAGTAGGATCTAGCAGTATCATTTTGCAAATGAACATTTTGTCTTGATATATGCTTGTTATGGTGCTTTAAATGTAAGGGTGATTCTTGTAGCTTGGTTTTTGGCTGTCTAACTTAACTTTGAAGTAGTTTAGGCTACAATTTACTGGCCCATATTTTAGGAGATAGGAACTAGAAGTGTAGAGGTGCTCTTTAATTTGTTTTTCATGAACATTATCTGCCTCCTTTGACATTAAATGAAGTGTATGATATTGATTTGTATTTGTATGTGTCAGAATCTTTTTCATTTTGTTATGATGTTTTGTTGATTATGTTGCAAAGTCTATGGTTTAGCCTAATGCAACTCTTAATGCATTCATGCTTTTGGTAGCATATTGGTCATCATCTTGAAGAAGTATTTATATTGCACTCTAGTTGGTTACCGTGTTGTGTTGCGGCTCAATAGTTGAGCTCTTGGG

Network for GWHGAAEX002526

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	41	122	5.20E-17
PF02362.20	B3	272	358	1.40E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.070
SRP064423	SRR2545915	Juvenile tuber	65.850
SRP108465	SRR5643513	five period of Gastrodia elata	52.920
	SRR5643514	five period of Gastrodia elata	52.670
	SRR5643515	five period of Gastrodia elata	44.050
	SRR5643524	five period of Gastrodia elata	53.020
	SRR5643525	five period of Gastrodia elata	55.210
	SRR5643528	five period of Gastrodia elata	37.080
	SRR5643658	five period of Gastrodia elata	59.830
	SRR5643659	five period of Gastrodia elata	43.760
	SRR5643660	five period of Gastrodia elata	36.730
	SRR5643661	five period of Gastrodia elata	33.290
	SRR5643662	five period of Gastrodia elata	30.340
	SRR5643663	five period of Gastrodia elata	41.090
	SRR5643664	five period of Gastrodia elata	31.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	80.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	72.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	98.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	87.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	89.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	77.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	92.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	49.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.600
SRP279888	Gastro	Gastrodia elata tuber	67.86
	Juven	Juvenile tuber	126.98
	Mother_Gastro	Mother tuber of Gastrodia elata	77.99
	Mother_Juven	Mother tuber of Juvenile	100.85