Detail information of GWHGAAEX002531/evm.TU.scaffold_120.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2026 | 3.00E-180 | Spindle pole body protein - Sad1p |
| nr | gi|672172511|ref|XP_008806349.1| | 0 | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9C585|UBP8_ARATH | 1.00E-10 | Ubiquitin carboxyl-terminal hydrolase 8 |
| trEMBL | tr|M0RQ34|M0RQ34_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P07040_001} |
| TAIR | AT4G22350 | 3.00E-180 | Ubiquitin C-terminal hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000118 | 1978290 | 2009547 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002531
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02148.18 | zf-UBP | 130 | 191 | 1.40E-13 |
| PF00443.28 | UCH | 231 | 558 | 2.70E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12847 | USP39, SAD1 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006397 | Biological Process | mRNA processing |
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0000245 | Biological Process | spliceosomal complex assembly |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.960 |
| SRR2545915 | Juvenile tuber | 31.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.790 |
| SRR5643514 | five period of Gastrodia elata | 26.290 | |
| SRR5643515 | five period of Gastrodia elata | 25.760 | |
| SRR5643524 | five period of Gastrodia elata | 26.800 | |
| SRR5643525 | five period of Gastrodia elata | 31.950 | |
| SRR5643528 | five period of Gastrodia elata | 28.730 | |
| SRR5643658 | five period of Gastrodia elata | 28.760 | |
| SRR5643659 | five period of Gastrodia elata | 29.360 | |
| SRR5643660 | five period of Gastrodia elata | 29.740 | |
| SRR5643661 | five period of Gastrodia elata | 29.520 | |
| SRR5643662 | five period of Gastrodia elata | 29.840 | |
| SRR5643663 | five period of Gastrodia elata | 27.920 | |
| SRR5643664 | five period of Gastrodia elata | 29.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 48.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.07 |
| Juven | Juvenile tuber | 48.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.74 | |
| Mother_Juven | Mother tuber of Juvenile | 40.75 |