Gene detail

Database	Orthologs	E value	Annotation
KOG	KOG0800	9.00E-85	FOG: Predicted E3 ubiquitin ligase
nr	gi\|743789386\|ref\|XP_010922891.1\|	4.68E-99	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Elaeis guineensis]
Swissprot	tr\|P0CH30\|RING1_GOSHI	3.00E-40	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|M1BJ75\|M1BJ75_SOLTU	7.00E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400046527}
TAIR	AT1G55530	9.00E-85	RING/U-box superfamily protein

Scaffold	Start	End	Strand
GWHAAEX00000118	2619076	2620206	+

Transcript Sequence
>GWHTAAEX002536 ATGGCTGATGCTATCCTTACTGGATACTGGTGTCATTTGTGTTCACAAATAGTGAACCCAGTTATGGCGTTGGAGCTGAAATGCCCGTTGTGTGATTCTGGATTTGTAGAAGAGATGGTTGGAAGGGAAGTACCTGGAACTGAAGGCATAGGGCCAGAAAGAGCCCTTTCTCCTTGGGCCTCTATCCTGCTTGGAATGATGATTAATTCTCCTTCTCGTCGTCATGGCCAGAGGAACCTAAGGATCAATGGTGATGATGATTCTGATATGGAGAGGGAGCTAGAAACCGTTCTGTCGAGGAGGTCAAGGGTGTTGGAAGAGGATAGCAGGACGATTAGAGGAGAAGAGGAGGAGGATGACTCGGAAACCGAACGTGAATTGCAGTCGATTGTGCGGAGGAGGAGACAGAGTGCATCTGTACTTCGATTGCTTCAGAGCCTTCGAGAAGATTTTAGGCCTGATCCTGATGAAATTGAGAGGGAGAATGAGCTGGAAAATGACCGGGAAAGCGAGAGTGTTGTTTTCATTAATTCTTTTAGTCGAGCAATCGTTCTTCAAGGATCCTTAGATTCAGATCAGAACCAAAGCCTTGAATCTGATAGTAATGCATTCGGCGCCTCCATTGGGGATTATTTCATTGGATCAGGACTGGATTTATTGCTGCAGCATTTAGCTGAGAATGATCCTAACAGATATGGTACACCACCTGCCAAAAAAGAGGCTGTTGATGGGATGCCTGTTGTGAAAATTGAGGAGAAGATAAACTGTCCAGTCTGTTTGGAGTGCTTTGAATTCGGTACCGAAGCTAGAGAATTGCCATGTAAGCATAAATTTCATGGTGAATGCATTTTACCATGGCTTGAGCTCCATAGTTCATGCCCAGTTTGCAGATTTCAGTTGCCTTCCGATGAGACAAAAACATATGGGTTAGCTGATGCCAATATGGCTGAAAGATTTGACAGTGTTGCTGGAGTTAGAGGAAGGAGGAATAGAACCAGGACATCTGCCTCATGGCCTTTCAGTGGCTTGTTCTCTTTTTCAGGTTCTCAGAATGATACTAATTCTTCTTCTTCTTCAACTACAGCTTCTTCTACATCTGATTACAACATCCCACCTGCAGATGAAAATTAA

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.5	zinc_ribbon_9	9	39	1.70E-09
PF13639.5	zf-RING_2	255	297	1.50E-11

Protein Sequence

Gene family	subfamily
Ubiquitin Family	RING

KO	Enzyme	pathway	mapID
--	--	--	--

GO term	Ontology	Name
GO:0061630	Molecular Function	ubiquitin protein ligase activity

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	153.600
SRP064423	SRR2545915	Juvenile tuber	188.150
SRP108465	SRR5643513	five period of Gastrodia elata	60.650
	SRR5643514	five period of Gastrodia elata	58.210
	SRR5643515	five period of Gastrodia elata	49.620
	SRR5643524	five period of Gastrodia elata	59.190
	SRR5643525	five period of Gastrodia elata	76.910
	SRR5643528	five period of Gastrodia elata	52.250
	SRR5643658	five period of Gastrodia elata	96.490
	SRR5643659	five period of Gastrodia elata	44.600
	SRR5643660	five period of Gastrodia elata	44.400
	SRR5643661	five period of Gastrodia elata	39.930
	SRR5643662	five period of Gastrodia elata	55.120
	SRR5643663	five period of Gastrodia elata	57.180
	SRR5643664	five period of Gastrodia elata	55.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	84.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	78.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	85.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	78.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	96.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	82.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	92.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	73.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	64.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	64.490
SRP279888	Gastro	Gastrodia elata tuber	42.46
	Juven	Juvenile tuber	48.56
	Mother_Gastro	Mother tuber of Gastrodia elata	39.33
	Mother_Juven	Mother tuber of Juvenile	36.10