Detail information of GWHGAAEX002538/evm.TU.scaffold_120.80


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|170290521|ref|YP_001737337.1|2.00E-34small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
KOGKOG00705.00E-129GTP-binding ADP-ribosylation factor Arf1
nrgi|302757603|ref|XP_002962225.1|1.09E-129ARF family GTPase [Selaginella moellendorffii]
Swissprottr|P51823|ARF2_ORYSJ7.00E-131ADP-ribosylation factor 2
trEMBLtr|D8QSR7|D8QSR7_SELML4.00E-130ARF family GTPase {ECO:0000313|EMBL:EFJ37485.1}
TAIRAT1G106305.00E-129ADP-ribosylation factor A1F

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011830016643018984+
Transcript Sequence

Network for GWHGAAEX002538

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00025.20Arf51771.10E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07937ARF1 Phospholipase D signaling pathway map04072
Endocytosismap04144

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms711.400
SRR2545915Juvenile tuber688.210
SRP108465SRR5643513five period of Gastrodia elata304.380
SRR5643514five period of Gastrodia elata305.260
SRR5643515five period of Gastrodia elata310.130
SRR5643524five period of Gastrodia elata312.770
SRR5643525five period of Gastrodia elata549.020
SRR5643528five period of Gastrodia elata587.780
SRR5643658five period of Gastrodia elata620.690
SRR5643659five period of Gastrodia elata341.420
SRR5643660five period of Gastrodia elata345.650
SRR5643661five period of Gastrodia elata331.220
SRR5643662five period of Gastrodia elata335.940
SRR5643663five period of Gastrodia elata359.040
SRR5643664five period of Gastrodia elata350.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1311.450
SRR6049655Rhizomagastrodiae_C368-T10_good_1392.570
SRR6049656Rhizomagastrodiae_C368-T07_good_1319.760
SRR6049657Rhizomagastrodiae_C368-T07_good_1343.620
SRR6049658Rhizomagastrodiae_C368-T04_good_1390.910
SRR6049659Rhizomagastrodiae_C368-T04_good_1403.450
SRR6049660Rhizomagastrodiae_C368-T01_good_1308.740
SRR6049661Rhizomagastrodiae_C368-T04_good_1351.960
SRR6049662Rhizomagastrodiae_C368-T01_good_1283.490
SRR6049663Rhizomagastrodiae_C368-T01_good_1306.860
SRR6049664Rhizomagastrodiae_C368-T10_good_1344.730
SRR6049665Rhizomagastrodiae_C368-T10_good_1344.730
SRP279888GastroGastrodia elata tuber 611.11
JuvenJuvenile tuber458.18
Mother_GastroMother tuber of Gastrodia elata 321.16
Mother_JuvenMother tuber of Juvenile 362.05